mjprzybilla

Wellcome Sanger Institute - previously DKFZ & Stanford UniversityCambridge, UK

Pinned Repositories

master_thesis
This repository is providing the analysis scripts for the master thesis entitled "Modelling tumorigenesis in vitro using tissue-derived gastric organoids"
Language:R1 1 01
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language:Nextflow00
mtdna_bloodPhylogenies
Repository for the documentation of the analysis perforrmed in my rotation report "Mitochondrial variation in large somatic phylogenies from blood".
Language:R00
mtDNA_pipeline
Calling somatic mutations in mitochondrial DNA from relapsed/refractory multiple myeloma patients
Language:R1 1 00
NTCU_manuscript
Aberrant basal cell clonal expansions shape early lung carcinogenesis
Language:Jupyter Notebook00
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow0 0 00
sccaf
Single-Cell Clustering Assessment Framework
Language:Jupyter Notebook00
MB_scSeq
This repo contains scripts for the analysis of scDNA- and scSeq data from LFS medulloblastoma accompanying the manuscript "SINGLE CELL MULTI-OMICS ANALYSIS OF CHROMOTHRIPTIC MEDULLOBLASTOMA HIGHLIGHTS GENOMIC AND TRANSCRIPTOMIC CONSEQUENCES OF GENOME INSTABILITY".
Language:Jupyter Notebook4 11 01

mjprzybilla/master_thesis
This repository is providing the analysis scripts for the master thesis entitled "Modelling tumorigenesis in vitro using tissue-derived gastric organoids"
Language:R1 1 01
mjprzybilla/mtDNA_pipeline
Calling somatic mutations in mitochondrial DNA from relapsed/refractory multiple myeloma patients
Language:R1 1 00
mjprzybilla/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language:Nextflow00
mjprzybilla/mtdna_bloodPhylogenies
Repository for the documentation of the analysis perforrmed in my rotation report "Mitochondrial variation in large somatic phylogenies from blood".
Language:R00
mjprzybilla/NTCU_manuscript
Aberrant basal cell clonal expansions shape early lung carcinogenesis
Language:Jupyter Notebook00
mjprzybilla/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow0 0 00
mjprzybilla/sccaf
Single-Cell Clustering Assessment Framework
Language:Jupyter Notebook00