Pinned Repositories
chromatiblock
Colinear block visualisation tool
Contiguity
Tool for visualising assemblies.
covbamic
COVID_pipe
DiscoPlot
Visualising discordant reads
drawDomains
Script to draw domains produced by CD-Search tool
Easyfig
Development version of Easyfig
HapFlow
Visualise interstrain recombination from environmental samples.
qhery
Identification of mutations in SARS-CoV-2 associated with resistance to treatment.
vis_scripts
Compilation of simple visualisation scripts.
mjsull's Repositories
mjsull/Easyfig
Development version of Easyfig
mjsull/chromatiblock
Colinear block visualisation tool
mjsull/HapFlow
Visualise interstrain recombination from environmental samples.
mjsull/Contiguity
Tool for visualising assemblies.
mjsull/DiscoPlot
Visualising discordant reads
mjsull/vis_scripts
Compilation of simple visualisation scripts.
mjsull/qhery
Identification of mutations in SARS-CoV-2 associated with resistance to treatment.
mjsull/COVID_pipe
mjsull/covbamic
mjsull/drawDomains
Script to draw domains produced by CD-Search tool
mjsull/M.viridis
Script for creating custom trees with etetoolkit
mjsull/SeqFindR
A tool to easily create informative genomic feature plots
mjsull/spa_typing
Computational method for finding spa types.
mjsull/AOC2023
mjsull/bioconda-recipes
Conda recipes for the bioconda channel.
mjsull/clinical_meta_db_download
snakemake pipeline for downloading and formatting a clinical metagenomic database
mjsull/GWviz
scripts for visalising differences between closely related prokaryotic genomes, changes in a genome over time and recurrent variants between sets of genome pairs.
mjsull/mjsull.github.io
user site
mjsull/ngpipe
Pipeline for typing Neisseria spp
mjsull/nmerCoverageFinder
Finds median nmer coverage of contigs.
mjsull/reduceReads
mjsull/smrt_job_submit
Scripts for automatically submitting smrt jobs to the pipeline
mjsull/utilities
utility scripts