Pinned Repositories
bioruby
bioruby
biosql
The BioSQL database schema and associated scripts.
GENErator
ROR app to combine DNA sequence data from multiple FASTA files for phylogenetic inference.
monographers_do
nexus_parser
A parser/lexer for Nexus (phylogenetic) files.
obo_parser
An OBO file parser.
presentations
Presentations that contain significant personal opinion that might not reflect my employers
nomen
A nomenclatural ontology for names (not concepts).
taxonpages
TaxonPages is a tool to serve TaxonPages.
taxonworks
Workbench for biodiversity informatics.
mjy's Repositories
mjy/obo_parser
An OBO file parser.
mjy/presentations
Presentations that contain significant personal opinion that might not reflect my employers
mjy/monographers_do
mjy/nexus_parser
A parser/lexer for Nexus (phylogenetic) files.
mjy/cgq
computing genonmic quality
mjy/BespokeSynth
Software modular synth
mjy/curriculum
Biodiversity Informatics Curriculum Interest Group
mjy/dwc-archive
gem to handle Darwin Core Archive files
mjy/dwc_agent
Ruby gem to cleanse Darwin Core terms containing people names prior to passing to its dependent parser.
mjy/gbifrb
GBIF Ruby client; docs: http://www.rubydoc.info/gems/gbifrb/0.1.0
mjy/gnfinder
Ruby gem to access functionality of ``gnfinder`` project written in Go
mjy/htindex
creates an index of scientific names in HathiTrust
mjy/instructor-training
Instructor Training
mjy/jowl
Jruby experiments with owlapi
mjy/keep-a-changelog
If you build software, keep a changelog.
mjy/nexml.github.io
Static website elements for the NeXML project website.
mjy/OBOFoundry.github.io
OBO Foundry Ontology Registry
mjy/PARAMO
PARAMO pipeline
mjy/path
a maze of twisty little ideas (about biodiversity informatics), all alike
mjy/purl.obolibrary.org
A new system for managing OBO PURLs
mjy/rgeo-proj4
Proj4 extension for rgeo.
mjy/rqrcode
A Ruby library that encodes QR Codes
mjy/Ruby-Graphviz
[MIRROR] Ruby interface to the GraphViz graphing tool
mjy/sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
mjy/serrano
Low level Ruby client for Crossref
mjy/shacl
Implementation of Shapes Constraint Language (SHACL) for RDF.rb
mjy/styles
Official repository for Citation Style Language (CSL) citation styles.
mjy/trias-project-checklist-recipe
R workshop repo
mjy/vscode-rails
vscode rails extension,Ruby On Rails "Asset Tag Helpers" and "Form Helpers snippets,.erb syntax highlights,related files Navigation,Go to Definition.
mjy/vuepress-next
Repo for VuePress 2