mkierczak
Bioinformatics Data Analyst. #rstats and #R enthusiast. Interested in computational genetics, uC programming and SDR.
NBISweden, Uppsala UniversitySweden
Pinned Repositories
aiRbnb
RaukR 2019 project
airspyhf
Code repository for AirspyHF+
AIS-catcher
Dual channel AIS receiver for RTL SDR dongles and Airspy HF+. Output is send as NMEA messages to screen or broadcasted via a UDP network connection.
annovarR
annovarR: a variant annotation and visualization system based on R and Shiny framework
cutadapt
cutadapt removes adapter sequences from sequencing reads
mkierczak's Repositories
mkierczak/AIS-catcher
Dual channel AIS receiver for RTL SDR dongles and Airspy HF+. Output is send as NMEA messages to screen or broadcasted via a UDP network connection.
mkierczak/autoencoders_workshop
Collection of materials for teaching about autoencoders
mkierczak/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
mkierczak/awesome-R
A curated list of awesome R packages, frameworks and software.
mkierczak/burden_testing
A collection of scripts to run variant aggregation tests from whole-genome sequencing data.
mkierczak/dispr
Degenerate In-Silico PcR
mkierczak/dotfiles
My personal collection of dotfiles.
mkierczak/Ender3V2S1
This is optimized firmware for Ender3 V2/S1 3D printers.
mkierczak/Examples
Virtual Machine examples
mkierczak/FreeVersion
A featured-limited version the SDR4.space embedded software, originally designed for embedded GPU systems.
mkierczak/GarminInstinct2s-BBWF
Battery saving watch face for instinct 2s with full set of features
mkierczak/ggmap
A package for plotting maps in R with ggplot2
mkierczak/hop_analysis
mkierczak/lighthousemap
OpenStreetMap's Blinking Beacons
mkierczak/LTS-BiodiversityAnalysisCAO
Code repository for the support project P_Snoeijs-Leijonmalm_2205, specifically related to identifying and mapping COI reads.
mkierczak/mkierczak
Marcin Kierczak
mkierczak/mkteachr
Functions, datasets, examples and other assets related to teaching R.
mkierczak/nmeasimulator
NMEA Sentence Generator
mkierczak/paintbynumbersgenerator
Paint by numbers generator
mkierczak/pico-tflmicro
Pico TensorFlow Lite Port
mkierczak/pyais
AIS message decoding and encoding in Python (AIVDM/AIVDO)
mkierczak/r_oop_simulation
Simulate disease spreading using R OOP systems
mkierczak/reference_database_creator
creating reference databases for amplicon sequencing
mkierczak/rvtests
Rare variant test software for next generation sequencing data
mkierczak/Terrain2STL
A web-based service that converts publicly available HGT files to useful STL files.
mkierczak/thebaldgeek.github.io
Rough notes on how to go about setting up the hardware and software for ACARS decoding.
mkierczak/TouchTerrain_for_CAGEO
Touch Terrain: A python app to create 3D printable terrain models (STL/OBJ) from only elevation data (via Google Earth Engine) or from a local geotiff. Has been used for CNC terrain models. Runs as a web app (http://touchterrain.org), as .py file (standalone.py) or as jupyter notebook. Docker image: https://github.com/ChHarding/TouchTerrain_jupyter
mkierczak/tre
The approximate regex matching library and agrep command line tool.
mkierczak/vep_loftee
Docker image for VEP which supports Loftee Plugin
mkierczak/vsearch_repro
Versatile open-source tool for microbiome analysis