mkoiok

mkoiok's Stars

• timeseriesAI/tsai

  Time series Timeseries Deep Learning Machine Learning Python Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai

  Language:Jupyter Notebook5.2k646

• goldmansachs/gs-quant

  Python toolkit for quantitative finance

  Language:Jupyter Notebook7.7k948

• edtechre/pybroker

  Algorithmic Trading in Python with Machine Learning

  Language:Python2k252

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k721

• mirandabohm/Stock_Predictor

  An LSTM-based forecaster. Model automatically imports most recent close data via Yahoo Finance.

  Language:Python2

• TA-Lib/ta-lib-python

  Python wrapper for TA-Lib (http://ta-lib.org/).

  Language:Cython9.6k1.8k

• FJD-CEPH/aCNViewer

  Comprehensive genome-wide visualization of absolute copy number and copy neutral variations

  Language:Python2812

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript848108

• RCollins13/CNView

  Visualization and annotation of CNVs from population-scale whole-genome sequencing data

  Language:R6911

• chrisamiller/readDepth

  R package for inferring copy number from read depth

  Language:R3110

• etal/cnvkit

  Copy number variant detection from targeted DNA sequencing

  Language:Python547165

• fredsanto/coverageMaster

  Language:Python123

• fritzsedlazeck/parliament2

  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

  459

• ding-lab/BICSEQ2

  BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA

  Language:Shell165

• fritzsedlazeck/Sniffles

  Structural variation caller using third generation sequencing

  Language:Python55592

• marbl/CHM13

  The complete sequence of a human genome

  91599

• BoevaLab/FREEC

  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

  Language:C++14849

• qm2/NanoSpring

  Compressor for Nanopore Sequencing Reads

  Language:C221

• pjedge/longshot

  diploid SNV caller for error-prone reads

  Language:Rust18326

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python134k26.7k

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.3k6.4k

• pytorch/pytorch

  Tensors and Dynamic neural networks in Python with strong GPU acceleration

  Language:Python83.1k22.4k

• tensorflow/tensorflow

  An Open Source Machine Learning Framework for Everyone

  Language:C++186k74.3k

• scikit-learn/scikit-learn

  scikit-learn: machine learning in Python

  Language:Python59.8k25.4k

• tensorflow/models

  Models and examples built with TensorFlow

  Language:Python77k45.8k

• CompVis/stable-diffusion

  A latent text-to-image diffusion model

  Language:Jupyter Notebook68k10.1k

• nanoporetech/megalodon

  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

  Language:Python19730

• je-suis-tm/quant-trading

  Python quantitative trading strategies including VIX Calculator, Pattern Recognition, Commodity Trading Advisor, Monte Carlo, Options Straddle, Shooting Star, London Breakout, Heikin-Ashi, Pair Trading, RSI, Bollinger Bands, Parabolic SAR, Dual Thrust, Awesome, MACD

  Language:Python5.9k1.2k

• EliteQuant/EliteQuant

  A list of online resources for quantitative modeling, trading, portfolio management

  2.9k572

• robertmartin8/PyPortfolioOpt

  Financial portfolio optimisation in python, including classical efficient frontier, Black-Litterman, Hierarchical Risk Parity

  Language:Jupyter Notebook4.5k951