Pinned Repositories
atlas
ATLAS - Three commands to start analyzing your metagenome data
awesome
😎 Awesome lists about all kinds of interesting topics
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
biocode
Bioinformatics script collection
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
biopython
Official git repository for Biopython (originally converted from CVS)
codespaces_test
DESMAN
De novo Extraction of Strains from MetAgeNomes
kraken-rs
A novice rust user's attempt to rewrite kraken2. Lots of help from LLMs, any suggestions and PRs welcome. Help me become a better rustacean!
strainr
Strain-resolved classification and assembly primer
mladen5000's Repositories
mladen5000/kraken-rs
A novice rust user's attempt to rewrite kraken2. Lots of help from LLMs, any suggestions and PRs welcome. Help me become a better rustacean!
mladen5000/strainr
Strain-resolved classification and assembly primer
mladen5000/atlas
ATLAS - Three commands to start analyzing your metagenome data
mladen5000/awesome
😎 Awesome lists about all kinds of interesting topics
mladen5000/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
mladen5000/biocode
Bioinformatics script collection
mladen5000/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
mladen5000/biopython
Official git repository for Biopython (originally converted from CVS)
mladen5000/codespaces_test
mladen5000/DESMAN
De novo Extraction of Strains from MetAgeNomes
mladen5000/github-for-developers-7
mladen5000/Hannigan_CRCVirome_mBio_2018
Investigating the gut virus communities associated with colon cancer.
mladen5000/MAGpy
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
mladen5000/mladen5000.github.io
Finn-Perkins website
mladen5000/oldweb
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
mladen5000/Python-Algorithms
All Algorithms implemented in Python
mladen5000/python-quickstart-codespaces
MSLearn sample code
mladen5000/rosalind_rust
mladen5000/rust_walkdir
mladen5000/scientific-visualization-book
An open access book on scientific visualization using python and matplotlib
mladen5000/scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
mladen5000/scikit-bio-tutorials
Interactive tutorials for using scikit-bio in biological research
mladen5000/skills-resolve-merge-conflicts
My clone repository
mladen5000/storm
An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.
mladen5000/strainge-paper
Analysis scripts and Jupyter notebooks accompanying the StrainGE paper
mladen5000/sui
Sui, a next-generation smart contract platform with high throughput, low latency, and an asset-oriented programming model powered by the Move programming language
mladen5000/test-site
site
mladen5000/testing-codespaces
mladen5000/upgraded-octo-guide
mladen5000/WEVOTE
Taxonomic classification method of metagenomic reads