Graph-based imputation and matching, a.k.a. new imputation method (NIM).
| Subdirectory | Description |
|---|---|
| graph_generator | Python code to generate (haplotype frequency) CSV files which can be imported into Neo4j |
| gl_impute | old Python code for graph-based imputation. Still needed for cypher queries (?) |
| multi_race_ipute | Python code for graph-based imputation |
| validation | Code for validation of components of this repository |
Follow Graph Generation to generate haplotype frequency CSV files and import to Neo4j.
Follow Imputation directions to produce imputation results from frequency files.
Follow Match Validation to perform matching and compare against consensus results.