MATLAB analysis framework of Steinmetz 2019 (https://www.nature.com/articles/s41586-019-1787-x) mouse Neuropixels data.
Key features:
- Binning, binarisation of sparse spike time data
- Cross-correlation, correlation, simultaneous spike count functions
- Cross-correlogram pipeline to identify connected neuron pairs.
- Transition Probability Matrix estimator (built mostly by Angus Leung, Monash University).
- Integrated Information Theory (https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003588) analysis, using PyPhi library in Python.