amino-acid-distributions
All data, code, and figures for the paper: Johnson, M.M., Wilke, C.O. Site-Specific Amino Acid Distributions Follow a Universal Shape. J Mol Evol (2020). doi: 10.1007/s00239-020-09976-8
Figures from the paper are produced by the following files:
simulated_protein.Rmd - Figures 1 and 2
simulated_protein_all.Rmd - Figure 3
simulated_v_empirical.Rmd - Figure 4 and supplementary figures 2 and 3
null_models.Rmd - Figure 5
fitting_parameters.Rmd - Figure 6 and supplementary figures 4, 6, and 8
empirical_protein_all.Rmd - Supplementary figure 1
fitting_parameters_all.Rmd - Supplementary figure 5
rank_rsa.Rmd - Supplementary figure 7