Pinned Repositories
conduit
C++ library that wraps intra-thread, inter-thread, and inter-process communication in a uniform, modular, object-oriented interface, with a focus on asynchronous high-performance computing applications.
dishtiny
DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality
emscripten-targz
A minimal working example of fetching and extracting a .tar.gz archive with Emscripten
git-commit-atom
Easily edit Git Commit messages in the current Atom pane 🌟 😏
hstrat
hstrat enables phylogenetic inference on distributed digital evolution populations
joinem
CLI for fast, flexbile concatenation of tabular data using polars
mwe-singularity-checkpoint
A minimal working example of DMTCP checkpoint-restart inside a Singularity container.
outset
add zoom indicators, insets, and magnified panels to matplotlib/seaborn visualizations with ease!
qspool
Dependency-free solution to spool jobs into SLURM scheduler without exceeding queue capacity limits
teeplot
organize data visualization output, automatically picking meaningful names based on semantic plotting variables
mmore500's Repositories
mmore500/joinem
CLI for fast, flexbile concatenation of tabular data using polars
mmore500/hstrat
hstrat enables phylogenetic inference on distributed digital evolution populations
mmore500/mmore500.github.io
My personal and academic site
mmore500/alifedata-phyloinformatics-convert
alifedata-phyloinformatics-conversion helps apply traditional phyloinformatics software to alife standardized data
mmore500/curaitor
mmore500/professional-statements
mmore500/AvidaGeneDupe
mmore500/bioio.org
Website for BI/O Seminar Series
mmore500/byteboost24-mmt
ByteBoost 2024 summer workshop. Project on Multi-Modal Transportation
mmore500/cookiecutter-dishtiny-project
mmore500/cryptic-sequence-concept
Exploratory work on measures for epistatic and marginal sequence complexity.
mmore500/DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
mmore500/DendroPy.jl
mmore500/downstream
downstream is a library of stream curation algorithms
mmore500/evolvability-playground-concept
mmore500/hereditary-stratigraph-concept
Proof of concept work for hereditary stratigraph method
mmore500/hopthru
My very own link shortener
mmore500/hstrat-algorithm-analysis
Formal analysis of the hereditary stratigraphy algorithm
mmore500/hstrat-evolutionary-inference
How can we use phylogenetic analysis to characterize evolutionary dynamics in distributed digital evolution populations?
mmore500/hstrat-reconstruction-quality
Supporting materials for “A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models”
mmore500/hstrat-surface-concept
Algorithm development for lightweight fixed-length recency-proportional hereditary stratigraphy data structure
mmore500/hstrat-wafer-scale
mmore500/phylogeny-informed-evaluation
mmore500/phylotrack-algorithm-analysis
Manuscript, split from hstrat-algorithm-analysis
mmore500/phylotrackpy
Python phylogeny tracker for in silico evolution experiments
mmore500/pv
An alpine container with pv installed
mmore500/pyrimidine
🧬OO implement of genetic algorithm by python
mmore500/slurmbin
My utility scripts for working on slurm clusters
mmore500/wse-sketches
Development work for agent-based evolution/epidemiological modeling on the Cerebras Wafer-scale Engine (WSE) hardware
mmore500/zamanlh.github.io
Website!