mmpust

mmpust's Stars

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.2k64320627

• scikit-learn-contrib/boruta_py

  Python implementations of the Boruta all-relevant feature selection method.

  Language:Python1.5k4188256

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.4k32823191

• muhanzhang/pytorch_DGCNN

  PyTorch implementation of DGCNN

  Language:Python372852122

• cszhangzhen/HGP-SL

  Hierarchical Graph Pooling with Structure Learning

  Language:Python32531954

• GFNOrg/torchgfn

  GFlowNet library

  Language:Jupyter Notebook213109526

• mims-harvard/GraphXAI

  GraphXAI: Resource to support the development and evaluation of GNN explainers

  Language:Python16252329

• aimat-lab/gcnn_keras

  Graph convolutions in Keras with TensorFlow, PyTorch or Jax.

  Language:Jupyter Notebook10778630

• COMBINE-lab/pufferfish

  An efficient index for the colored, compacted, de Bruijn graph

  Language:C10793719

• aqlaboratory/rgn2

  Language:Python101111129

• qbxlvnf11/graph-neural-networks-for-graph-classification

  Pytorch implementation of various Graph Neural Networks (GNNs) for graph classification

  Language:Python964222

• kcleal/dysgu

  Toolkit for calling structural variants using short or long reads

  Language:Cython9238811

• nd7141/graph_datasets

  Data for "Understanding Isomorphism Bias in Graph Data Sets" paper.

  Language:Python87337

• kisungyou/Rdimtools

  Dimension Reduction and Estimation Methods

  Language:R5231510

• benedekrozemberczki/FEATHER

  The reference implementation of FEATHER from the CIKM '20 paper "Characteristic Functions on Graphs: Birds of a Feather, from Statistical Descriptors to Parametric Models".

  Language:Python443612

• BioinformaticsLabAtMUN/Promotech

  Machine-learning-based general bacterial promoter prediction tool.

  Language:C4231711

• segalab/SGVFinder

  Language:Python2933315

• kpmainali/CooccurrenceAffinity

  Computes affinity between two entities based on their co-occurrence

  Language:R25171

• medema-group/BiG-MAP

  Language:Python244277

• lukasjf/contrastive-gnn-explanation

  Language:Jupyter Notebook18221

• xthua/bacant

  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

  Language:F*18187

• stat-lab/MOPline

  Detection and genotyping of structural variants

  Language:Perl152125

• EnvGen/toolbox

  Various scripts used at the EnvGen group, directed towards metagenomic analysis.

  Language:Python14912

• pteridin/MIDASwrappeR

  R wrapper around C++ implementation of MIDAS (Microcluster-Based Detector of Anomalies in Edge Streams)

  Language:C++10211

• benoslab/causalMGM

  causalMGM is an R package that allow users to learn undirected and directed (causal) graphs over mixed data types (i.e., continuous and discrete variables).

  Language:R9445

• biobakery/MTX_model

  R package for differential expression analysis in metatranscriptomics

  Language:R91056

• kuijjerlab/lionessR

  Single sample network reconstruction in R

  Language:R7102

• dvera/travis

  Tools in R for the Analysis and Visualization of Intervals and Scores

  Language:R3302

• michaelfop/mixggm

  Mixtures of Gaussian graphical models for model-based clustering with sparse covariance and concentration matrices

  Language:R3301

• shazzzm/nitk

  Network Inference Toolkit

  Language:Python21