mne-tools/mne-bids-pipeline

Issues

• logging order in maxfilter step is confusing

  #985 opened a month ago by drammock
  1

• Question about interpolation and big artifact removal

  #981 opened a month ago by juliapottkaemper
  0

• finding empty room fails with multiple sessions but succeeds with one session

  #964 opened a month ago by drammock
  5

• pipeline fails if emptyroom data is missing cHPI

  #974 opened a month ago by drammock
  1

• MAINT: Make docs fail loudly on linking issues

  #978 opened a month ago by larsoner
  1

• Drop use of `pick_types()`

  #973 opened 2 months ago by hoechenberger
  0

• hpos timepoints error

  #967 opened a month ago by drammock
  5

• Potential logging bug related to CSP or covariance estimation

  #972 opened 2 months ago by hoechenberger
  0

• Silence Pandas deprecation warnings from seaborn?

  #971 opened 2 months ago by hoechenberger
  1

• Loading csv files?

  #958 opened 3 months ago by juliapottkaemper
  19

• use tsss with mf_st_duration = signal duration

  #952 opened 4 months ago by SophieHerbst
  3

• document / provide code on how to update anatomical landmarks after coregistration

  #956 opened 3 months ago by SophieHerbst
  0

• EyeTracking / New Step?

  #949 opened 4 months ago by behinger
  4

• Manual steps (e.g., selecting epochs for rejection)

  #924 opened 5 months ago by hoechenberger
  4

• Remove ref-names from git archival settings

  #941 opened 4 months ago by hoechenberger
  0

• BUG: sub-average report displays incorrect Event Counts when the dataset has multiple tasks

  #946 opened 4 months ago by jtmbeta
  2

• ValueError: Extension .xlsx is not allowed.

  #944 opened 4 months ago by SophieHerbst
  2

• We're currently applying reject thresholds to ECG and EOG epochs used for ICA artifact detection, but I think we shouldn't

  #939 opened 5 months ago by hoechenberger
  4

• Report section on original raw data doesn't contain bads

  #930 opened 5 months ago by hoechenberger
  9

• Reconsider how we add original and auto-bads-processed data to the report

  #932 opened 5 months ago by hoechenberger
  0

• Don't perform ICA cleaning on raw data by default when epochs are present

  #925 opened 5 months ago by hoechenberger
  1

• Align report sections with pipeline steps

  #880 opened 5 months ago by SophieHerbst
  7

• reduce storage size of derivative folders?

  #922 opened 5 months ago by SophieHerbst
  7

• ENH: Add "run up to this step" option

  #858 opened 7 months ago by larsoner
  7

• STC saturated – rank problem?

  #905 opened 5 months ago by SophieHerbst
  11

• implement expandable logging system

  #921 opened 5 months ago by SophieHerbst
  1

• Rename memory_* parameters to cache_*

  #920 opened 5 months ago by hoechenberger
  0

• DOC: Document command-line options

  #916 opened 5 months ago by larsoner
  1

• Reconsider default of `ch_types`

  #912 opened 6 months ago by hoechenberger
  0

• sensor/_99_group_average not rerun after change in config parameters

  #901 opened 6 months ago by SophieHerbst
  9

• Drop support for Python 3.9?

  #906 opened 6 months ago by hoechenberger
  3

• Use `list`, `tuple`, `dict` etc. instead of `List`, `Tuple`, `Dict` in type annotations

  #907 opened 6 months ago by hoechenberger
  1

• BUG: report can contain stale stats when one subject is used

  #900 opened 6 months ago by SophieHerbst
  6

• BUG: ICA unsafely overwrites components tsv file

  #881 opened 6 months ago by SophieHerbst
  10

• run-noise Output file hash mismatch for _task-noise_scores.json

  #876 opened 6 months ago by SophieHerbst
  11

• CSP decoding error: all fits failed

  #882 opened 6 months ago by SophieHerbst
  12

• Add annotated-types to list of dependencies

  #884 opened 6 months ago by hoechenberger
  0

• Test on more platforms, more Python versions, more MNE versions

  #879 opened 6 months ago by hoechenberger
  1

• Remove leading underscores from all module names?

  #870 opened 6 months ago by hoechenberger
  3

• ENH: Simplify config in logs

  #868 opened 6 months ago by larsoner
  2

• ENH: Split ICA into three steps

  #857 opened 6 months ago by SophieHerbst
  27

• Adjust vmin/vmax parameters in epochs image in report to rejection limits

  #848 opened 6 months ago by SophieHerbst
  12

• DOC: Document steps where config options are used

  #862 opened 6 months ago by larsoner
  3

• DOC: Mark steps as optional in flowchart

  #861 opened 6 months ago by larsoner
  1

• Review ICA report logic

  #864 opened 6 months ago by hoechenberger
  1

• Critical error: Missing file: proc-ica_split-01_epo.fif

  #852 opened 7 months ago by SophieHerbst
  27

• ENH: Improve table formatting of events

  #846 opened 7 months ago by larsoner
  0

• BUG: Decoding M/EEG data needs to scale channel types

  #849 opened 7 months ago by larsoner
  0

• BUG: Parallelization over runs randomizes report order

  #845 opened 7 months ago by larsoner
  0

• MAINT: Deduplicate filename decisions based on step choices

  #844 opened 7 months ago by larsoner
  0