mnoergaard

Assistant Professor @ University of Copenhagen, Department of Computer Science; interested in neuroimaging, data sharing, statistics and preprocessing.

Pinned Repositories

bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
Language:MATLAB0 0 00
bids-matlab
MATLAB / Octave tools for BIDS datasets
Language:MATLAB0 0 00
bids-specification
Brain Imaging Data Structure (BIDS) Specification
Language:Python0 0 00
bids-validator
Validator for the Brain Imaging Data Structure
Language:JavaScript0 0 00
bloodstream
A PET BIDS blood-processing tool
Language:R0 0 00
petpipelineMATLAB
Language:MATLAB1 1 00
petprep
Language:Jupyter Notebook4 1 71
petprep_extract_tacs
PETPrep BIDS App for extracting time activity curves for PET data
Language:Python3 2 90
petprep_hmc
PETPrep head motion correction workflow
Language:Jupyter Notebook5 1 64
petqc
Language:Python1 1 01

mnoergaard's Repositories

mnoergaard/petprep_hmc
PETPrep head motion correction workflow
Language:Jupyter Notebook5 1 64
mnoergaard/petprep
Language:Jupyter Notebook4 1 71
mnoergaard/petprep_extract_tacs
PETPrep BIDS App for extracting time activity curves for PET data
Language:Python3 2 90
mnoergaard/petpipelineMATLAB
Language:MATLAB1 1 00
mnoergaard/petqc
Language:Python1 1 01
mnoergaard/bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
Language:MATLAB0 0 00
mnoergaard/bids-matlab
MATLAB / Octave tools for BIDS datasets
Language:MATLAB0 0 00
mnoergaard/bids-specification
Brain Imaging Data Structure (BIDS) Specification
Language:Python0 0 00
mnoergaard/bids-validator
Validator for the Brain Imaging Data Structure
Language:JavaScript0 0 00
mnoergaard/bloodstream
A PET BIDS blood-processing tool
Language:R0 0 00
mnoergaard/cobidas-PET
A prototype web-app for a checklist for PET methods reporting
Language:JavaScript0 0 00
mnoergaard/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Language:C++0 0 00
mnoergaard/eddymotion
Open-source eddy-current and head-motion correction for dMRI.
Language:Python0 0 00
mnoergaard/ENIGMA
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
Language:Python0 0 00
mnoergaard/hmcpet
BIDS app to perform PET motion correction of dynamic data
Language:Python0 1 10
mnoergaard/JuSpace
This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomography derived information
Language:MATLAB0 0
mnoergaard/mnoergaard.github.io
Language:HTML
mnoergaard/nipype
Workflows and interfaces for neuroimaging packages
Language:Python0 03
mnoergaard/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
Language:Python0 0
mnoergaard/noergaard.github.io
Language:Jupyter Notebook1 0
mnoergaard/poldracklab.github.io
Poldracklab guide
Language:EJS0 0
mnoergaard/psych-open-science-guide
Guide to open science practices for psychology
Language:HTML0 0
mnoergaard/pybids
Python tools for querying and manipulating BIDS datasets.
Language:Python0 0
mnoergaard/pydra
Pydra Dataflow Engine
Language:Python0 0
mnoergaard/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
Language:Jupyter Notebook0 0
mnoergaard/rcps-modified-petprep
A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
Language:MATLAB0 0
mnoergaard/scikit-learn-mooc
scikit-learn-mooc
Language:Jupyter Notebook0 0
mnoergaard/statsthinking21-core
Core statistical text for Statistical Thinking in the 21st Century
mnoergaard/tmp_files
Language:HTML1 0