mnoergaard
Assistant Professor @ University of Copenhagen, Department of Computer Science; interested in neuroimaging, data sharing, statistics and preprocessing.
Pinned Repositories
bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
bids-matlab
MATLAB / Octave tools for BIDS datasets
bids-specification
Brain Imaging Data Structure (BIDS) Specification
bids-validator
Validator for the Brain Imaging Data Structure
bloodstream
A PET BIDS blood-processing tool
petpipelineMATLAB
petprep
petprep_extract_tacs
PETPrep BIDS App for extracting time activity curves for PET data
petprep_hmc
PETPrep head motion correction workflow
petqc
mnoergaard's Repositories
mnoergaard/petprep_hmc
PETPrep head motion correction workflow
mnoergaard/petprep
mnoergaard/petprep_extract_tacs
PETPrep BIDS App for extracting time activity curves for PET data
mnoergaard/petpipelineMATLAB
mnoergaard/petqc
mnoergaard/bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
mnoergaard/bids-matlab
MATLAB / Octave tools for BIDS datasets
mnoergaard/bids-specification
Brain Imaging Data Structure (BIDS) Specification
mnoergaard/bids-validator
Validator for the Brain Imaging Data Structure
mnoergaard/bloodstream
A PET BIDS blood-processing tool
mnoergaard/cobidas-PET
A prototype web-app for a checklist for PET methods reporting
mnoergaard/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
mnoergaard/eddymotion
Open-source eddy-current and head-motion correction for dMRI.
mnoergaard/ENIGMA
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. š¤
mnoergaard/hmcpet
BIDS app to perform PET motion correction of dynamic data
mnoergaard/JuSpace
This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomography derived information
mnoergaard/mnoergaard.github.io
mnoergaard/nipype
Workflows and interfaces for neuroimaging packages
mnoergaard/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
mnoergaard/noergaard.github.io
mnoergaard/poldracklab.github.io
Poldracklab guide
mnoergaard/psych-open-science-guide
Guide to open science practices for psychology
mnoergaard/pybids
Python tools for querying and manipulating BIDS datasets.
mnoergaard/pydra
Pydra Dataflow Engine
mnoergaard/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
mnoergaard/rcps-modified-petprep
A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
mnoergaard/scikit-learn-mooc
scikit-learn-mooc
mnoergaard/statsthinking21-core
Core statistical text for Statistical Thinking in the 21st Century
mnoergaard/tmp_files