mobilegenome
Postdoctoral researcher in Bioinformatics @Vogelwarte
Swiss Ornithological InstituteSempach, Switzerland
Pinned Repositories
bioscripts
Bioinformatic helper scripts
bismark_add_NN_to_contig
Adding NN to short contigs to make bismark work
demo-tutorial
dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
phylogenomics
Script to perform phylogenomic analyses, e.g. creating genome fragments as basis for gene tree inference etxc.
teddypi
The TeddyPi pipeline: Transposable Element detection and discovery for Phylogenetic inference
mobilegenome's Repositories
mobilegenome/teddypi
The TeddyPi pipeline: Transposable Element detection and discovery for Phylogenetic inference
mobilegenome/bioscripts
Bioinformatic helper scripts
mobilegenome/bismark_add_NN_to_contig
Adding NN to short contigs to make bismark work
mobilegenome/demo-tutorial
mobilegenome/dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
mobilegenome/dra-docker-training
Material for training docker
mobilegenome/dstats
An implementation of the D-statistics test for gene flow signal that works on consensus sequences.
mobilegenome/duprates
mobilegenome/ena-upload-cli
ENA upload tool - script your Open Data upload to the European Nucleotide Archive
mobilegenome/dvc-test
Testing DVC
mobilegenome/humanhash-web
A little webserver running on web.py returning a two-word human hash.
mobilegenome/lib-common
A repository for common tasks in my daily work.
mobilegenome/libraRMy
R package of lib-common
mobilegenome/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
mobilegenome/molgenis-projects
Repository containing settings, configuration files, and public data for different MOLGENIS project servers
mobilegenome/msmc2-prepare
Prepare a VCF for MSMC2 by injecting phased genotypes
mobilegenome/nextflow
A DSL for data-driven computational pipelines
mobilegenome/nf-mapq-stats
Small nextflow pipeline to get MAPQ statistics over genomic windows
mobilegenome/Panda
Panda is a django implementation for a blogging website.
mobilegenome/primerpython
A wrapper for Primer3 to automatically create PCR primers for locus alignments.
mobilegenome/pubmed_url
Get PubMed URLs from a list of paper titles (and authors).
mobilegenome/R-ecology-lesson
Data Analysis and Visualization in R for Ecologists
mobilegenome/scEpiAge
mobilegenome/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
mobilegenome/snakemake-fileinfo
Snakemake workflow to collect file size and MD5 sum for a list of files
mobilegenome/snakemake-methylanalysis
Post-mapping analysis of DNA methylation sequencing data
mobilegenome/snakemake-snpmasked-refgenome
Snakemake workflow to inject SNPs from a strain into a the mouse refrence genome and create a cellranger index
mobilegenome/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
mobilegenome/social_distance
Use Google Public popularity data to check if people adhere to social distancing
mobilegenome/teddypi-aux
Auxiliary analyses and scripts from the TeddyPi paper