Pinned Repositories
brainpy
A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
cython_pyinstaller_example
A simple example repository describing the process of building a PyInstaller executable for a Cython-compiled program
glycopeptidepy
A library for describing the structure of glycopeptides
glycresoft
An LC-MS/MS glycan and glycopeptide search engine
glypy
Glycan Analysis and Glycoinformatics Library for Python
ms_deisotope
A library for deisotoping and charge state deconvolution of complex mass spectra
ms_peak_picker
A small library to provide peak picking for software processing mass spectrometry data
mzdata
mzsignal
A Rust library for basic signal processing in mass spectrometry
psims
A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
mobiusklein's Repositories
mobiusklein/ms_deisotope
A library for deisotoping and charge state deconvolution of complex mass spectra
mobiusklein/glypy
Glycan Analysis and Glycoinformatics Library for Python
mobiusklein/mzdata
mobiusklein/ms_peak_picker
A small library to provide peak picking for software processing mass spectrometry data
mobiusklein/psims
A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
mobiusklein/brainpy
A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
mobiusklein/mzsignal
A Rust library for basic signal processing in mass spectrometry
mobiusklein/glycresoft
An LC-MS/MS glycan and glycopeptide search engine
mobiusklein/glycopeptidepy
A library for describing the structure of glycopeptides
mobiusklein/mzdeisotope
mobiusklein/thermorawfilereader.rs
Reading Thermo RAW files from Rust
mobiusklein/cyarray
An exercise in templating fast, resizable arrays for Cython that incur less Python overhead than the array module and expose a pure C representation which does not require any Python interaction.
mobiusklein/mzmeta-poc
mobiusklein/mzpeaks
A Rust crate for mass spectral peaks
mobiusklein/proforma-grammar
mobiusklein/pynumpress
A thin, more convenient wrapper around MSNumpress
mobiusklein/pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
mobiusklein/casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
mobiusklein/chemical_elements
Rust Chemical Composition Library
mobiusklein/glycopeptide_feature_learning
mobiusklein/glycresoft_app
Web Application and Task Server for GlycReSoft
mobiusklein/glycresoft_desktop
Electron-based Desktop Application for GlycReSoft
mobiusklein/mass-fragment-index
A Rust implementation of an in-memory mass search index
mobiusklein/mzsvg
mobiusklein/opendal
Apache OpenDAL: access data freely.
mobiusklein/quantms
Quantitative mass spectrometry workflow.
mobiusklein/quantms.io
The proteomics quantification format, extending mzTab for large scale datasets.
mobiusklein/SpectralLibraryFormat
Spectral Library Format: A standard format to exchange/distribute spectral libraries/archives
mobiusklein/svg
Composer and parser for SVG
mobiusklein/timsrust