/ATPP_CLI

ATPP (Automatic Tractography-based Parcellation Pipeline) command line version

Primary LanguageMATLABGNU General Public License v3.0GPL-3.0

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ATPP command line version

DOI

ATPP (Automatic Tractography-based Parcellation Pipeline)

  • Multi-ROI oriented brain parcellation
  • Automatic parallel computing
  • Modular and flexible structure
  • Simple and easy-to-use settings

Notice

  • Usage: bash ATPP.sh batch_list.txt

Prerequisites:

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  • Tools:
    • FSL (with FDT toolbox), SGE and MATLAB (with SPM8)
  • Data files:
    • T1 image for each subject
    • b0 image for each subject
    • images preprocessed by FSL(BedpostX) for each subject
  • Directory structure:
     Working_dir
     |-- sub1
     |   |-- T1_sub1.nii
     |   |-- b0_sub1.nii
     |-- ...
     |-- subN
     |   |-- T1_subN.nii
     |   |-- b0_subN.nii
     |-- ROI
     |   |-- ROI_L.nii
     |   `-- ROI_R.nii
     `-- log

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