Pinned Repositories
bashpack
My current .bashrc and vim configurations
Bio--SNP--Inherit
This is a module for converting Single Nucleotide Polymorphism (SNP) genotype data to parental allele designations. This helps with creating files suitable for mapping, identifying and characterizing crossovers, and also helps with quality control.
Bio-IRCF-FASTQ-Tiny
FASTQ iterator designed to be much faster and much more flexible than using BioPerl
bioinformatics-workbook
Bioinformatics Workbook repository
English_Spanish_Dictionary
GBrowseConfigStrict
Prepare selected lines from GBrowse config for syntax checking, including strictures and warnings. Intended for use with Vim.
p6-wrapper-for-p5-cat
Example of wrapping up a Perl 5 script in a Perl 6 module
Perl6-misc
Some of my miscellaneous Perl 6 scripts
sarray_script
Create shell scripts that process whole directories of files using SLURM arrays. Also works for paired files (like paired-end FASTQ files).
smcpp
SMC++ infers population history from whole-genome sequence data.
molecules's Repositories
molecules/Perl6-misc
Some of my miscellaneous Perl 6 scripts
molecules/p6-wrapper-for-p5-cat
Example of wrapping up a Perl 5 script in a Perl 6 module
molecules/smcpp
SMC++ infers population history from whole-genome sequence data.
molecules/ThingsIdoLikeAboutPerl6
molecules/Bio-IRCF-FASTQ-Tiny
FASTQ iterator designed to be much faster and much more flexible than using BioPerl
molecules/bin
molecules/BiocIntro
Course material for introductory R / Bioconductor courses
molecules/bowtie
An ultrafast memory-efficient short read aligner
molecules/combine_FASTQ_lanes
Combine FASTQ files that are similarly named, but differ only by lane
molecules/CompOpt-2014-Fall
Computational Optimization (IMSE 8001-01) Fall 2014
molecules/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
molecules/FASTAptamer-ClusterParser
Parse fastaptamer_cluster output files (Perl 6 module)
molecules/Ideas
molecules/molecules.github.io
molecules/my_bin
Collection of various useful utilities
molecules/Neuffer-ParseDump
molecules/Neuffer-Pipeline
molecules/Neuffer-PostWiki
molecules/Neuffer-RenderPhenoGroupWikiPage
molecules/org-mode-test
Testing display of org-mode files in GitHub
molecules/P6-Data-Dump-Tree
Renders data structures in a tree fashion
molecules/pandoc_result
molecules/PegasusDemo
molecules/Perl6-Data-MessagePack
Message pack implementation for perl6 / msgpack.org[Perl 6]
molecules/Perl6-FairLists
Break a list up into user-specified number of parts as evenly as possible
molecules/planets
Dummy repository example from Software Carpentry
molecules/roast
Perl 6 test suite
molecules/simple-count-to-fastaptamer-count
Convert simple list of count (space) string to FASTAptamer-count format
molecules/Table
Perl6 module for converting a table of data into a nested hash
molecules/testjunk