Pinned Repositories
16s_from_liuyongxin
R code for 16S
5years_
the repository is for hospital project(nz),the tcga part is what I need
agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
BERN2
BERN2: an advanced neural biomedical namedentity recognition and normalization tool
GEO
GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
Guideline-for-Computational-Biology-and-Bioinformatics
Always look new
NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
scRNA_smart_seq2
tcga_example
molesong's Repositories
molesong/5years_
the repository is for hospital project(nz),the tcga part is what I need
molesong/agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
molesong/BERN2
BERN2: an advanced neural biomedical namedentity recognition and normalization tool
molesong/biobert-pytorch
PyTorch Implementation of BioBERT
molesong/BiomedGPT
BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks
molesong/GEO
molesong/GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
molesong/Guideline-for-Computational-Biology-and-Bioinformatics
Always look new
molesong/BERT-CRF-for-BioNLP-OST2019-AGAC-Task1
AGAC-BioNL-OST2009-Task1 BERT+CRF
molesong/BERT-for-BioNLP-OST2019-AGAC-Task2
BERT-for-BioNLP-OST2019-AGAC-Task2
molesong/bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
molesong/book_nbs-Deep_Learning_for_Coder_-with_fastai_and_PyTorch-
Notebooks for upcoming fastai book (draft / incomplete)
molesong/BubblePlot
BubblePlot for lipids
molesong/Cancer-Alterome
Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.
molesong/Cell_BLAST
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
molesong/deep-learning-with-pytorch
Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.
molesong/gpt_academic
为ChatGPT/GLM提供实用化交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。
molesong/ipop_aging
Code for aging project
molesong/joint-ner-and-re
This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models".
molesong/K-RET_mls
K-RET: Knowledgeable Biomedical Relation Extraction System
molesong/LinkBERT
[ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links
molesong/MicrobiomeStatPlot_from_liuyongxin
Interpretation and visualization of microbiome charts. The readme have some very useful information. Always look new.
molesong/microsampling_multiomics
Data for microsampling multiomics project
molesong/molesong
molesong/molesong.github.io
可 fork 的博客教程模板
molesong/molesong_sanyecao.github.io
本项目为Pages静态博客示范，对应的演示网站地址为 👉
molesong/R-BERT
Pytorch implementation of R-BERT: "Enriching Pre-trained Language Model with Entity Information for Relation Classification"
molesong/SLE-ImmuneAtlas
scRNA and scVDJ analysis for SLE(系统性红斑狼疮) samples.
molesong/tidymass
tidymass
molesong/VMap1.1-Population_history_of_wheats
Some codes about evolutionary history of wheats