/Puffinus_mauretanicus_genome

Table of Contents

Introduction

This is a small git repository of some relevant data sets from the Puffinus mauretanicus genome assembly (genome annotation, comparative genome analysis).

Copyright (c) 2021 Evolutionary Genomics and Bioinformatics and FiMol Labs, Universitat de Barcelona.

Citation

Cuevas-Caballé, C., Ferrer Obiol, J., Vizueta, J., Genovart, M., Gonzalez-Solís, J., Riutort, M., & Rozas, J. (2022). The first genome of the Balearic shearwater (Puffinus mauretanicus) provides a valuable resource for conservation genomics and sheds light on adaptation to a pelagic lifestyle. Genome Biology and Evolution, 14(5), evac067.

Supporting information

Additional information regarding this publication and draft reference genome are in:

  • NGS raw data file in the NCBI Sequence Read Archive (SRA): SRR17231300 (ONT), SRR17230447 (RNA-Seq) and SRR17055223 (Illumina).
  • BioProject PRJNA780920 and BioSamples SAMN23492024, SAMN24039388 and SAMN23212142.
  • The whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession number: JAJKFH000000000.

Guide on Annotation files

  • pmau_....annot_func.gff3 - General Feature Format (GFF) file with coding genes annotations
  • pmau_....annot_proteins.aa - Protein coding gene translated sequences (FASTA format)
  • pamu...augustus_annot.codingseq - Protein coding gene nucleotide sequences (FASTA format)

License

Copyright (c) 2021. Evolutionary Genomics & Bioinformatics Lab, Universitat de Barcelona