BC Cancer Molecular Oncology Department

Pinned Repositories

colossus
Single Cell Sequencing Sample and Library Database
Language:HTML3 1 05
cromwell-workflows
Workflow templates (WDL, inputs.json, trigger.json) for commonly used bioinformatics pipelines that run via CromwellOnAzure
Language:WDL0 0 01
ctDNA_pypeliner
Language:Python2 1 01
Epiclomal
Epiclomal package, software for clustering of sparse DNA methylation data
Language:R7 5 46
HE_immuno_image_analysis
Language:Jupyter Notebook0 1 00
mondrian_nf
Nextflow version of Mondrian
Language:Nextflow0 0 00
mondrian_tasks
mondrian imports modified for Cromwell on Azure
Language:WDL0 0 00
sisyphus
Shahlab workflow and data management automation
Language:Python1 5 03
tantalus
Sequence File Database and File Transfer Manager
Language:Python2 0 03
yvr_pipelines
Language:R0 4 00

BC Cancer Molecular Oncology Department's Repositories

molonc/Epiclomal
Epiclomal package, software for clustering of sparse DNA methylation data
Language:R7 5 46
molonc/colossus
Single Cell Sequencing Sample and Library Database
Language:HTML3 1 05
molonc/ctDNA_pypeliner
Language:Python2 1 01
molonc/tantalus
Sequence File Database and File Transfer Manager
Language:Python2 0 03
molonc/sisyphus
Shahlab workflow and data management automation
Language:Python1 5 03
molonc/cromwell-workflows
Workflow templates (WDL, inputs.json, trigger.json) for commonly used bioinformatics pipelines that run via CromwellOnAzure
Language:WDL0 0 01
molonc/drug_resistant_material
All materials and scripts from our paper "Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers"
Language:R0 4 00
molonc/HE_immuno_image_analysis
Language:Jupyter Notebook0 1 00
molonc/merFISH_report_pipeline
This pipeline will take images captured from the merFISH MATLAB code and produce reports on the integrity of the data
Language:Python0 1 11
molonc/mondrian_nf
Nextflow version of Mondrian
Language:Nextflow0 0 00
molonc/mondrian_tasks
mondrian imports modified for Cromwell on Azure
Language:WDL0 0 00
molonc/yvr_pipelines
Language:R0 4 00
molonc/atlas-helpers
Language:JavaScript1 0
molonc/cellseg_tool
Segmentation Tool for merFISH images
Language:Python2 0
molonc/DLP_2023
The most recent code for getting the single cell system running
Language:MATLAB1 0
molonc/dlp_plots
Language:R1 0
molonc/dlptools
internal r package collecting various dlp functions.
Language:R
molonc/exseq
Code repository for the new expansion microscopy setup
Language:Python0 2
molonc/leap_deconvolution
Language:R2 0
molonc/MERFISH_Acquisition
Language:MATLAB
molonc/merLIN
This pipeline is forked from https://github.com/IMAXT/MERlin/tree/imaxt.
Language:Python
molonc/saltant
Web app for running distributed, containerized, and mutable tasks
Language:Python3 0
molonc/single_cell_pipeline
Single Cell Analysis Automated Workflow
molonc/SingleCell_Acquisition
Language:MATLAB1 0
molonc/SpotCountingApp
Foci counting application