monarch-ebi-dev

Pinned Repositories

ebi-patternanalysis-pipeline
docker container that analyses all ontologies in the shared volumes corpus directory and returns markdown and csv files.
Language:HTML00
eqwriter
Language:Java1 2 20
impc-ontology-pipeline
IMPC ontology pipeline
Language:Jupyter Notebook10
odk_utils
Language:Jupyter Notebook1 2 00
pato_survey
Language:HTML0 2 00
potato-phenotype-ontology
Language:HTML0 2 00
ro_survey
RO Survey interactive shiny app (Dockerised)
Language:HTML0 2 00
robot_tests
Language:Makefile00
testobographs
Language:Java00
VFB_neo4j
A repository of scripts for extending the OLS neo4J DB for use as a VFB back end server.
Language:HTML0 2 00

monarch-ebi-dev's Repositories

monarch-ebi-dev/eqwriter
Language:Java1 2 20
monarch-ebi-dev/impc-ontology-pipeline
IMPC ontology pipeline
Language:Jupyter Notebook10
monarch-ebi-dev/odk_utils
Language:Jupyter Notebook1 2 00
monarch-ebi-dev/ebi-patternanalysis-pipeline
docker container that analyses all ontologies in the shared volumes corpus directory and returns markdown and csv files.
Language:HTML00
monarch-ebi-dev/obographs-test
Language:Makefile0 2 00
monarch-ebi-dev/pato_survey
Language:HTML0 2 00
monarch-ebi-dev/potato-phenotype-ontology
Language:HTML0 2 00
monarch-ebi-dev/ro_survey
RO Survey interactive shiny app (Dockerised)
Language:HTML0 2 00
monarch-ebi-dev/robot_tests
Language:Makefile00
monarch-ebi-dev/testobographs
Language:Java00
monarch-ebi-dev/VFB_neo4j
A repository of scripts for extending the OLS neo4J DB for use as a VFB back end server.
Language:HTML0 2 00
monarch-ebi-dev/dipper-docker
Basic dockerised version of Dipper (https://github.com/monarch-initiative/dipper).
Language:Shell2 0
monarch-ebi-dev/docker-neo4j-knowledgebase
Neo4j instance loaded with VFB KB
Language:Shell2 0
monarch-ebi-dev/Docker-OLS-loader
Import data from OWL to NEO4J PROD DB
Language:Shell2 0
monarch-ebi-dev/docker-sbt-owlery
Owlery server loaded with VFB.owl
Language:Shell2 0
monarch-ebi-dev/hp_analysis
HPO analysis results
2 0
monarch-ebi-dev/idserver.ui
For demo purposes, no production code
Language:CSS2 0
monarch-ebi-dev/inferencereport
Simple command line tool that outputs subsumptions and equivalences seperated by imports that caused them
Language:Java
monarch-ebi-dev/OLS
Ontology Lookup Service from SPOT at EBI
Language:JavaScript2 0
monarch-ebi-dev/ontologies
Will be deleted soon, dont use.
Language:Shell2 0
monarch-ebi-dev/ontologyinferenceanalysis
Analytics tool to get a brief understanding of the logical content of a set of ontologies, comparing different reasoners
Language:Java
monarch-ebi-dev/Pheno_odk_test
A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit
Language:Makefile2 0
monarch-ebi-dev/phenotype.utils
some utils
Language:Java2 0
monarch-ebi-dev/r-knitr
knits all Rmd files in shared volume
Language:Shell2 0
monarch-ebi-dev/robot_test
Failing robot tests
Language:Makefile2 0
monarch-ebi-dev/vfbtriplestore
Do not use. Instance for loading basic RDF4J triplestore with instance data
Language:Java2 0