/score_mip_variants

Score variants in the [MIP](http://mip-api.readthedocs.org/en/latest/) fashon.

Primary LanguagePythonMIT LicenseMIT

#Score Mip Variants#

Simple tool to add a rank score to all variants in a VCF and to annotate compounds with their combined rank score. Variants should be annotated with vep, snpeff and genmod for best result.

###Usage###

score_mip_variants examples/my_test.vcf examples/trio_ped.txt --plugin_file test.ini