moorembioinfo
Research fellow at the University of Warwick and the NIHR Health Protection Research Unit (HPRU) in gastrointestinal infections
Pinned Repositories
AlignRarefaction
Produce rarefaction analysis of core genome alignment-size from reference-mapped bacterial genomes
BactCore
Rapidly extract a flexible bacterial core genome alignment
BactVar
Map whole bacterial short reads with BWA and call variants with GATK. Outputs SnpEff annotated variants and a whole-genome alignment
ClonalFrameML
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
easy-ncbi-assembly-download
FlexCore
Extract flexible bacterial core genome alignments and compute SNP distances. Additionally, perform rarefaction-sampling analysis of alignments
KmerAperture
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
KPop
Unleash the full power of your k-mers!
Panseq-LC
Pan-genomic sequence analysis
ClonalFrameML
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
moorembioinfo's Repositories
moorembioinfo/KmerAperture
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
moorembioinfo/BactCore
Rapidly extract a flexible bacterial core genome alignment
moorembioinfo/FlexCore
Extract flexible bacterial core genome alignments and compute SNP distances. Additionally, perform rarefaction-sampling analysis of alignments
moorembioinfo/AlignRarefaction
Produce rarefaction analysis of core genome alignment-size from reference-mapped bacterial genomes
moorembioinfo/BactVar
Map whole bacterial short reads with BWA and call variants with GATK. Outputs SnpEff annotated variants and a whole-genome alignment
moorembioinfo/ClonalFrameML
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
moorembioinfo/easy-ncbi-assembly-download
moorembioinfo/KPop
Unleash the full power of your k-mers!
moorembioinfo/Panseq-LC
Pan-genomic sequence analysis