morchalabi
Associate research scientist in computational oncology
Columbia University Irving Medical CenterManhattan, NY
Pinned Repositories
PDAC_tropism
This project investigates PDAC propensity for liver vs lung
compaRe
R package with two functions for similarity measurement and clustering. It uses dynamic programming to measure spatial similarity between two datasets. It can be used to generate a similarity matrix as input to the clustering function. The clustering function reports maximal cliques as clusters and dense areas as communities.
COMPARE-suite
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
EnrichR
R module for interacting with Enrichr
veloPiPe
Universal count pipeline for RNA velocity estimation.
morchalabi's Repositories
morchalabi/COMPARE-suite
Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
morchalabi/compaRe
R package with two functions for similarity measurement and clustering. It uses dynamic programming to measure spatial similarity between two datasets. It can be used to generate a similarity matrix as input to the clustering function. The clustering function reports maximal cliques as clusters and dense areas as communities.
morchalabi/veloPiPe
Universal count pipeline for RNA velocity estimation.
morchalabi/EnrichR
R module for interacting with Enrichr