/pygenomeviz-data

pyGenomeViz data repository

pygenomeviz-data

Dataset repository for pyGenomeViz examples.

Resources

Genbank Dataset

  • Escherichia phage (escherichia_phage)
    Four Escherichia phage genome dataset (max_genome_size=72,179 bp).
    It contains protein sequence similarity comparison links generated by MUMmer.

    • JX128258
    • MH051335
    • MK373776
    • MH816966

  • Erwinia phage (erwinia_phage)
    Four Erwinia phage genome dataset (max_genome_size=358,115 bp).
    It contains protein sequence similarity comparison links generated by MUMmer.

    • MT939746
    • MT939487
    • MT939488
    • LT96552

  • Enterobacteria phage (enterobacteria_phage)
    Six Enterobacteria phage genome dataset (max_genome_size=45,206 bp).
    It contains CDS similarity comparison links generated by MMseqs.

    • NC_019724
    • NC_024783
    • NC_016566
    • NC_013600
    • NC_031081
    • NC_028901

  • Escherichia coli (escherichia_coil)
    Four E.coli genome dataset (max_genome_size=5,498,450 bp).
    It contains nucleotide sequence similarity comparison links generated by MUMmer.

    • NC_000913
    • NC_002695
    • NC_011751
    • NC_011750

  • Mycoplasma gallisepticum (mycoplasma_gallisepticum)
    Six M.gallisepticum genome dataset (max_genome_size=1,012,800 bp).
    It contains CDS similarity comparison links generated by MMseqs.

    • NC_004829
    • NC_018407
    • NC_018408
    • NC_018409
    • NC_017502
    • NC_017503

GFF Files

  • enterobacteria_phage.gff (genome_size=60,942 bp)
    RefSeq assembly accession: GCF_000844925.1

  • escherichia_coli.gff.gz (genome_size=4,641,652 bp)
    RefSeq assembly accession: GCF_000005845.2