Pinned Repositories
apptainer
Apptainer: Application containers for Linux
TranD
Transcript Distance Calculations
aTRAM
Fix finding the assembler module directory
bioconda-recipes
Conda recipes for the bioconda channel.
galaxy
Data intensive biology for everyone.
slurm-web
Slurm HPC workload manager web JS dashboard and JSON REST API
tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
vcf_fa_extractor
Extract reference and all variant sequences from a vcf file into a multi-fasta file
vcf_filter
Filter vcf files based on a list of SNPs
gait-gm
Modeling Metabolites as a function of gene expression
moskalenko's Repositories
moskalenko/slurm-web
Slurm HPC workload manager web JS dashboard and JSON REST API
moskalenko/vcf_fa_extractor
Extract reference and all variant sequences from a vcf file into a multi-fasta file
moskalenko/galaxy
Data intensive biology for everyone.
moskalenko/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
moskalenko/bioconda-recipes
Conda recipes for the bioconda channel.
moskalenko/beast2
Bayesian Evolutionary Analysis by Sampling Trees
moskalenko/biotools
Miscellaneous bioinformatics tools
moskalenko/btsbridge
moskalenko/CN_Learn
CN-Learn
moskalenko/ContaVect
Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data
moskalenko/CPT_GffParser
An extensively featured Python parser for GFF format reading and writing
moskalenko/gentb-snakemake
From FASTQ file to antibiotic resistance prediction using RandomForest - the GenTB pipeline wrapped in snakemake
moskalenko/infrastructure-playbook
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
moskalenko/jupyterhub_moss
Jupyterhub MOdular Slurm Spawner
moskalenko/kickstart.nvim
Personal nvim configuration
moskalenko/mediawiki-extensions-Auth_remoteuser
Github mirror of MediaWiki extension Auth_remoteuser - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing)
moskalenko/mkdocs-include-markdown-plugin
Mkdocs Markdown includer plugin
moskalenko/nipype-pbs-workflows
Port of CTSIT nipype workflow for bedpostx to SLURM
moskalenko/phyluce
software for UCE (and general) phylogenomics
moskalenko/pika
Pure Python RabbitMQ/AMQP 0-9-1 client library
moskalenko/pyDNA
Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation
moskalenko/q2-SCNIC
A QIIME2 plugin for running SCNIC
moskalenko/rc_training_conda_envs
moskalenko/Rcorrector
Error correction for Illumina RNA-seq reads
moskalenko/sarabande
a python package to measure the 3/4 PCFs of discrete periodic data.
moskalenko/Sarek
University of Florida High Performance Computing Implementation of Sarek's Pipeline to detect germline or somatic variants from normal or tumour/normal whole-genome, whole exome, or targeted sequencing
moskalenko/singularity
Singularity: Application containers for Linux
moskalenko/tools-artbio
Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
moskalenko/tools-devteam
Contains a set of Galaxy Tools mostly written by the Galaxy Team.
moskalenko/wASTRAL
Weighted version of ASTRAL