Pinned Repositories
api-examples
Allen Institute API usage examples
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
box-plots-sklearn
An implementation of some of the tools used by the winner of the box plots competition using scikit-learn.
Caffo-Coursera
A repository of my Coursera latex code and notes
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
cellity
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
cellsegm
An automated MATLAB tool for segmentation of surface stained cells.
CITE-seq-Count
Small script that allows to count TAGS from a CITE-seq experiment
mosquitoCat's Repositories
mosquitoCat/box-plots-sklearn
An implementation of some of the tools used by the winner of the box plots competition using scikit-learn.
mosquitoCat/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
mosquitoCat/CITE-seq-Count
Small script that allows to count TAGS from a CITE-seq experiment
mosquitoCat/data.table
R's data.table package extends data.frame:
mosquitoCat/datasciencectacontent
repository for Community Mentor content related to the Johns Hopkins University Data Science Specialization on Coursera
mosquitoCat/DE-analysis
mosquitoCat/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
mosquitoCat/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
mosquitoCat/FlowCytometryAnalysisUsingR
mosquitoCat/fullstack-course4
Example code for HTML, CSS, and Javascript for Web Developers Coursera Course
mosquitoCat/HCA_Heart
This is the official repository for the Human Cell Atlas Heart project.
mosquitoCat/linkedin-skill-assessments-quizzes
Full reference of LinkedIn answers 2022 for skill assessments (aws-lambda, rest-api, javascript, react, git, html, jquery, mongodb, java, Go, python, machine-learning, power-point) linkedin excel test lösungen, linkedin machine learning test LinkedIn test questions and answers
mosquitoCat/Metadata_analysis_code_final
Second round of analysis with improved protocols
mosquitoCat/monocle3
mosquitoCat/PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
mosquitoCat/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
mosquitoCat/polygenic_celltypes
mosquitoCat/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
mosquitoCat/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
mosquitoCat/rna-seq-pipeline_from_ENCODE-DCC
mosquitoCat/scDD
R package to identify genes with differential distributions in single-cell RNA-seq
mosquitoCat/scrat
Sing Cell R Analysis Toolkit
mosquitoCat/shinyWidgets
shinyWidgets : Extend widgets available in shiny
mosquitoCat/sra-tools
SRA Tools
mosquitoCat/STAR
RNA-seq aligner
mosquitoCat/stat_rethinking_2022
Statistical Rethinking course winter 2022
mosquitoCat/tidyproteomics
An S3 data object and framework for common quantitative proteomic analyses
mosquitoCat/useful_functions_for_healthcare_data_analysis
This repository holds handy functions for healthcare data analysis.
mosquitoCat/velocyto.py
RNA velocity estimation in Python
mosquitoCat/velocyto.R
RNA velocity estimation in R