Pinned Repositories
Angiosperms353
HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm
BIOL6304
Principles of Phylogenetics Texas Tech University
DPLSim
Pipeline for GWAS simulation and formatting for multiple analysis methods
HybPiper
Recovering genes from targeted sequence capture data
KewHybSeqWorkshop
Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.
MJPythonNotebooks
Visualizing gene tree conflict using Phyparts, and ETE3
Phylo_Comp_Methods_Shiny
Developing an app to demonstrate phylogenetic comparative methods in R.
phyloscripts
Helper scripts for processing and visualization of phylogenetics datasets
Structure-Pipeline
Pipeline to run structure on multiple values of K, summarize results with CLUMPP, and create barplot in R
mossmatters's Repositories
mossmatters/HybPiper
Recovering genes from targeted sequence capture data
mossmatters/phyloscripts
Helper scripts for processing and visualization of phylogenetics datasets
mossmatters/Angiosperms353
HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm
mossmatters/KewHybSeqWorkshop
Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.
mossmatters/MJPythonNotebooks
Visualizing gene tree conflict using Phyparts, and ETE3
mossmatters/Structure-Pipeline
Pipeline to run structure on multiple values of K, summarize results with CLUMPP, and create barplot in R
mossmatters/BIOL6304
Principles of Phylogenetics Texas Tech University
mossmatters/Phylo_Comp_Methods_Shiny
Developing an app to demonstrate phylogenetic comparative methods in R.
mossmatters/DPLSim
Pipeline for GWAS simulation and formatting for multiple analysis methods
mossmatters/genomics-scripts
Single-use scripts for genomics. May update later into a full package.
mossmatters/introToCmdLine
command line tutorial for bioinformatics
mossmatters/al-folio
A beautiful Jekyll theme for academics
mossmatters/bioconda-recipes
Conda recipes for the bioconda channel.
mossmatters/moss_popgen_scripts
Set of python and R scripts for analyzing populations of mosses
mossmatters/mossmattersweb
mossmatters/msaR
The BioJS MSA viewer wrapped into an R package
mossmatters/myhackmd
HackMD.io notes
mossmatters/plastidTargets
Identifying representative sequences for chloroplast genes
mossmatters/structureplot_shiny
Using Shiny to generate structure barplots, with population information
mossmatters/transcriptome_annotation
Assignment to get statistics about a genome assembly using stats from O'Neil and Emrich