filter_fasta
This Perl program filters fasta sequences by a size range.
ACKNOWLEDGEMENTS
This code was taken from this site. It is reposted here to allow for automated git cloning.
INSTALLATION
filter_fasta has no dependencies other than Perl itself.
USAGE
Program usage is as follows:
filter_fasta lower_bound upper_bound FASTA_input_file > FASTA_output_file
Required flags:
lower_bound INT lower bound of size to return (base pairs)
upper_bound INT upper bound of size to return (base pairs)
FASTA_input_file input FASTA file
EXAMPLE
filter_fasta 301 600 contigs.fasta > contigs_gt300_lte600.fasta