Pinned Repositories
atac-seq
Analysis of atac-seq data in differentiated iPSC
ATACseqQC
ATAC-seq Quality Control
CENTIPEDE.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
CNN-iPSC
Project with Marta Perez-Alcantara and Agata Wesolowska-Andersen
CNV-resources
Tools to detect CNVs from exome sequencing data
methylation
850k methylation (EPIC) Illumina pipeline
name-generator
Java library to generate random name(s) from different languages/cultures
Perez-Alcantara-et-al-2018
Scripts used in "Patterns of Differential Gene Expression in a Cellular Model of Human Islet Development, and Relationship to Type 2 Diabetes Predisposition"
RNA-seq_mapping_pipeline
RNA-seq mapping and deduping with snakemake
Thesis_scripts
Gathering the scripts used in my DPhil thesis
mperalc's Repositories
mperalc/methylation
850k methylation (EPIC) Illumina pipeline
mperalc/atac-seq
Analysis of atac-seq data in differentiated iPSC
mperalc/name-generator
Java library to generate random name(s) from different languages/cultures
mperalc/Perez-Alcantara-et-al-2018
Scripts used in "Patterns of Differential Gene Expression in a Cellular Model of Human Islet Development, and Relationship to Type 2 Diabetes Predisposition"
mperalc/RNA-seq_mapping_pipeline
RNA-seq mapping and deduping with snakemake
mperalc/Thesis_scripts
Gathering the scripts used in my DPhil thesis
mperalc/ATACseqQC
ATAC-seq Quality Control
mperalc/CENTIPEDE.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
mperalc/CNN-iPSC
Project with Marta Perez-Alcantara and Agata Wesolowska-Andersen
mperalc/CNV-resources
Tools to detect CNVs from exome sequencing data
mperalc/CV
mperalc/HNF1A
Scripts for single cell sequencing data of HNF1A mutated iPSCs
mperalc/KOLFC2
Analysis of KOLFC2 genotype and transcriptome
mperalc/marge
API for HOMER in R for Genomic Analysis using Tidy Conventions
mperalc/mperalc.github.io
mperalc/pipelines
Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
mperalc/plotting
All that code for plots
mperalc/popscle_helper_tools
Helper tools for popscle
mperalc/test
QC+static DE repository