Pinned Repositories
AGEpy
Bioinformatics tools for Python
bit
The [b]ermuda [i]nformation [t]riangle is a git-based tool for the management of code and data.
cluster_first_steps
Using the local cluster at the MPI-AGE.
Duplex-Sequencing
ENCODE_RNAseq_eCLIP
Integration of RNAseq and eCLIP data from ENCODE. An example with KHSRP.
flaski
Get your science on a leash!
galaxy-admin
galaxy server installation scripts and manual for a HPC cluster/slurm system
htseq-tools
This repository hosts scripts and tools for analysis of high throughput sequencing data.
myapp
A backbone for flask-dash based apps.
software_docker
Dockerfiles used to create the docker images containing most of the software we use.
Bioinformatics Core Facility of the Max Planck Institute for Biology of Ageing's Repositories
mpg-age-bioinformatics/flaski
Get your science on a leash!
mpg-age-bioinformatics/AGEpy
Bioinformatics tools for Python
mpg-age-bioinformatics/bit
The [b]ermuda [i]nformation [t]riangle is a git-based tool for the management of code and data.
mpg-age-bioinformatics/myapp
A backbone for flask-dash based apps.
mpg-age-bioinformatics/myapp-gtex
mpg-age-bioinformatics/nextflow-alternative-splicing
mpg-age-bioinformatics/nextflow-ATACSeq
mpg-age-bioinformatics/nextflow-IntronRetention
mpg-age-bioinformatics/nextflow-issues
mpg-age-bioinformatics/nf-acer
mpg-age-bioinformatics/nf-ATACseqQC
mpg-age-bioinformatics/nf-bagel
mpg-age-bioinformatics/nf-bedGraphToBigWig
mpg-age-bioinformatics/nf-bowtie2
mpg-age-bioinformatics/nf-bwa
mpg-age-bioinformatics/nf-cutadapt
mpg-age-bioinformatics/nf-deepvariant
mpg-age-bioinformatics/nf-deseq2
mpg-age-bioinformatics/nf-diffbind
mpg-age-bioinformatics/nf-drugz
mpg-age-bioinformatics/nf-featurecounts
mpg-age-bioinformatics/nf-flaski-configs
mpg-age-bioinformatics/nf-flexbar
mpg-age-bioinformatics/nf-macs
mpg-age-bioinformatics/nf-mageck
mpg-age-bioinformatics/nf-maude
mpg-age-bioinformatics/nf-sajr
mpg-age-bioinformatics/nf-star
mpg-age-bioinformatics/nf-vep
mpg-age-bioinformatics/software