Pinned Repositories
cancer_sim
CancerSim: A python3 package for stochastic cancer simulation in 2D.
CxGviz
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
GenomeFeatureFormatOntology
An ontology to represent genome feature annotations in gff3 format.
lineage-tracking
ncbo_rest_sample_code
Sample code that demonstrates the use of the NCBO REST services
nfdi4microbiota-knowledge-base
The NFDI4Microbiota Knowledge Base
obat
Plugins for OMERO
pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
PyFitMut
rarefan
Scientific Computing @ Max-Planck-Institute for Evolutionary Biology's Repositories
mpievolbio-scicomp/obat
Plugins for OMERO
mpievolbio-scicomp/CxGviz
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
mpievolbio-scicomp/GenomeFeatureFormatOntology
An ontology to represent genome feature annotations in gff3 format.
mpievolbio-scicomp/rarefan
mpievolbio-scicomp/misic
segmentation of rod-shaped bacteria
mpievolbio-scicomp/nfdi4microbiota-knowledge-base
The NFDI4Microbiota Knowledge Base
mpievolbio-scicomp/OBIS-CC
Community contributions to the OpenBIS ELN/LIMS ecosystem
mpievolbio-scicomp/2023-04-04-MPIEvolBio
Workshop repository for the Software Carpentry Workshop "Unix, Git, Programming and Plotting with Python" at MPI Evolutionary Biology
mpievolbio-scicomp/2024-03-18-MPIEvolBio
Workshop Website for Software Carpentries Workshop at MPI Evolutionary Biology
mpievolbio-scicomp/2024-11-18-MPIEvolBio
Website repo for the Software Carpentries Workshop at Max Planck Institute for Evolutionary Biology, Nov. 18. - 22. 2024
mpievolbio-scicomp/chado-LD
Linked data representations of the chado database schema
mpievolbio-scicomp/DeLTA_doc
Documentation Retraining DeLTA 2.0
mpievolbio-scicomp/Design-simple-iCn3D-UI-for-middle-high-school-students
mpievolbio-scicomp/diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
mpievolbio-scicomp/DLSegBench
Benchmarking deep learning based cell segmentation
mpievolbio-scicomp/Evolution-und-KI
mpievolbio-scicomp/FakeData
Detection of fabricated/falsified data using Brenford's law
mpievolbio-scicomp/gahyparopt
mpievolbio-scicomp/ImgSeg-Tools
Helpful information about several image segmentation tools. Installation, usage, parameters
mpievolbio-scicomp/Magritte
A modern software library for simulating radiation transport.
mpievolbio-scicomp/omero-rdf
A plugin for exporting RDF from OMERO
mpievolbio-scicomp/omero-scripts
Core OMERO Scripts
mpievolbio-scicomp/ometa
Community contributed scripts for metadata handling in omero-web
mpievolbio-scicomp/ontologies
Ontologies developed in the Scientific Computing Unit at Max Planck Institute for Evolutionary Biology
mpievolbio-scicomp/PyFPT
Stochastic first-passage time (FPT) simulations using importance sampling.
mpievolbio-scicomp/python-novice-inflammation
Programming with Python
mpievolbio-scicomp/python-template-package
This is a template project for a full fledged python package under the umbrella of MPI for Evolutionary Biology
mpievolbio-scicomp/PyTripalSerializer
Serialize Tripal's JSON-LD API into RDF format
mpievolbio-scicomp/quickstatements_client
A data model and client for QuickStatements (for Wikidata)
mpievolbio-scicomp/Tensorflow-Neuroevolution
Neuroevolution Framework for Tensorflow 2.x focusing on modularity and high-performance. Preimplements NEAT, DeepNEAT, CoDeepNEAT, etc.