Pinned Repositories
cb-proto
A prototype for a plotly driven client-side, hierarchical scatter plot specialized for investigating biological data.
cluster-db
Single cell clustering database
clusterdb-ingest
Scripts to ingest data into the Stuart lab's cluster database.
django_ninja_factoryboy_pipenv
Boiler plate setup showing off django + django-ninja + factory boy + pipenv setup
h5pandas
pandas like indexing syntax for a pandas dataframe in a .hdf file. It also provides a persistent store for subsets of row or column ids that can be used to index the matrix.
jqtrix
Reference for json parsing in bash with jq.
leesl
Simple implementation of Lee's bivariate spatial association metric.
NeighborCompare
A collection of methods for comparing and visualizing solutions from dimensionality reduction algorithms.
python-cli-starter
Boilerplate to make a simple python command line interface.
react-milestone-network
A data driven react component for a milestone network.
mrJeppard's Repositories
mrJeppard/NeighborCompare
A collection of methods for comparing and visualizing solutions from dimensionality reduction algorithms.
mrJeppard/react-milestone-network
A data driven react component for a milestone network.
mrJeppard/cb-proto
A prototype for a plotly driven client-side, hierarchical scatter plot specialized for investigating biological data.
mrJeppard/cluster-db
Single cell clustering database
mrJeppard/clusterdb-ingest
Scripts to ingest data into the Stuart lab's cluster database.
mrJeppard/django_ninja_factoryboy_pipenv
Boiler plate setup showing off django + django-ninja + factory boy + pipenv setup
mrJeppard/h5pandas
pandas like indexing syntax for a pandas dataframe in a .hdf file. It also provides a persistent store for subsets of row or column ids that can be used to index the matrix.
mrJeppard/jqtrix
Reference for json parsing in bash with jq.
mrJeppard/leesl
Simple implementation of Lee's bivariate spatial association metric.
mrJeppard/python-cli-starter
Boilerplate to make a simple python command line interface.
mrJeppard/hexamaps
python package for computations needed in Tumor Map visualization pipeline
mrJeppard/hexgrid-client
mrJeppard/local-graph-alignment-vis
This is a prototype exploring an interactive viewer for local graph alignment.
mrJeppard/mapserver
Serves x-y positions and attributes with groupby operations.
mrJeppard/monocle-docker
Environment for executing the monocle trajectory inference algorithm. Contains functions to convert the output to common formats.
mrJeppard/networkx
Official NetworkX source code repository.
mrJeppard/portals
Area for shared components and files used by HCA portals and services
mrJeppard/react-legends
Interactive legends for react
mrJeppard/react-svg-pan-zoom
:eyes: A React component that adds pan and zoom features to SVG
mrJeppard/scoreCT
Automated Cell Type Annotation
mrJeppard/streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io