mrc-ide/malariasimulation

Issues

• Add seasonal/perennial vector mix example to set_carrying_capacity vignette

  #329 opened 2 months ago by pwinskill
  0

• Model parameter consistency

  #328 opened 2 months ago by RJSheppard
  0

• Should asymptomatic infectivity update at every timestep?

  #327 opened 2 months ago by RJSheppard
  0

• Export run_resumable_simulation into namespace

  #314 opened 3 months ago by lmhaile
  4

• Add indication of evidence base and WHO position to intervention documentation and vignettes

  #312 opened 3 months ago by pwinskill
  1

• Add support for probes in the model

  #313 opened 3 months ago by plietar
  0

• setting completely correlated interventions does not result in the expected coverage

  #307 opened 4 months ago by htopazian
  3

• Age-based coverage of PMC

  #303 opened 5 months ago by ginacuomo
  4

• rate inputs for create_progression_process are average state residence times

  #290 opened 5 months ago by tbreweric
  3

• Update the specification format of the TBV

  #294 opened 5 months ago by pwinskill
  0

• unclear stochastic behaviour around when interventions are being turned on

  #284 opened 7 months ago by hannahslater
  2

• Age-disaggregated outputs can be slow

  #275 opened 10 months ago by pwinskill
  3

• Ability to save and load state and simulation history

  #196 opened 2 years ago by pwinskill
  4

• Model changing booster coverage over time using set_pev_epi

  #269 opened a year ago by lmhaile
  0

• Treated infectiousness parameter (ct) appears to be redundant?

  #268 opened a year ago by RJSheppard
  0

• Set individual mosquitos off by default

  #171 opened a year ago by pwinskill
  1

• Time varying sesaonlity profiles

  #217 opened a year ago by pwinskill
  0

• Flexibility in seasonal dynamics

  #218 opened a year ago by pwinskill
  0

• Documentation still exists for severe malaria prevalence

  #262 opened a year ago by giovannic
  1

• Clarify confusion between bed net input coverage and resulting population usage

  #213 opened a year ago by pwinskill
  0

• Calibration should be documented better

  #192 opened a year ago by giovannic
  0

• Progress bar functionality only works when timesteps is an object in global environment

  #257 opened a year ago by lmhaile
  0

• Solver failure in dev branch due to model.total_M becoming very large.

  #241 opened a year ago by pwinskill
  0

• Vector size cannot be NA issue in master branch with simple model run

  #242 opened a year ago by pwinskill
  0

• Min_wait error in set_mass_pev()

  #233 opened a year ago by kellymccain28
  1

• generic vaccine functions

  #208 opened a year ago by htopazian
  0

• Time-varying vaccine profiles for set_pev_epi

  #228 opened 2 years ago by giovannic
  1

• Default outputs

  #232 opened a year ago by pwinskill
  0

• Create a vignette for parameter draws

  #221 opened 2 years ago by pwinskill
  2

• Documentation for combining interventions

  #222 opened 2 years ago by putupradnya
  3

• Intervention coverage checks to help avoid ambiguous run failures

  #195 opened 2 years ago by pwinskill
  4

• Progress bar

  #212 opened 2 years ago by pwinskill
  3

• P vivax check

  #207 opened 2 years ago by pwinskill
  1

• Remove sprintf from malariasimulation.so

  #206 opened 2 years ago by giovannic
  0

• P vivax outputs

  #203 opened 2 years ago by pwinskill
  0

• P vivax treatment options.

  #202 opened 2 years ago by pwinskill
  1

• P vivax parameter translation

  #200 opened 2 years ago by pwinskill
  0

• P vivax hypnozoites variable

  #201 opened 2 years ago by pwinskill
  0

• Setting start and end period on routine based interventions

  #199 opened 2 years ago by asiraj-nd
  4

• Document that n_treated outputs successful treatments

  #197 opened 2 years ago by giovannic
  0

• IPTi

  #175 opened 2 years ago by pwinskill
  0

• Rendering of n_treated is actually n_successfully_treated

  #189 opened 2 years ago by pwinskill
  0

• Make MDA treatment consistent with old model

  #186 opened 2 years ago by giovannic
  0

• Time-varying demography

  #176 opened 2 years ago by pwinskill
  0

• Demography vignette is broken

  #178 opened 2 years ago by htopazian
  0

• Time-varying RTSS EPI coverage

  #174 opened 2 years ago by pwinskill
  0

• set_tbv ages defined in years

  #183 opened 2 years ago by pwinskill
  0

• Build times take too long

  #181 opened 2 years ago by giovannic
  0

• biology test failing on master branch

  #182 opened 2 years ago by giovannic
  2

• Time-varying min and max age groups from MDA/SMC

  #173 opened 2 years ago by pwinskill
  0