mrc-ide/mcstate

Issues

• Calculating cumulative incidence of deterministic continuous model in odin.dust for use in mcstate

  #240 opened 7 months ago
  0

• Smoothing Distribution from IF2

  #239 opened 7 months ago
  1

• Particle filter data with only one time point not allowed at the moment

  #230 opened a year ago
  0

• Inferring Parameters in an Age Structured Model

  #228 opened a year ago
  3

• (minor) Feature request: `str()` method for `<mcstate_pmcmc>` objects

  #226 opened a year ago
  1

• output conditional log likelihood and number of resampled particles in filter

  #224 opened 2 years ago
  0

• Integrate adaptive proposal for the multi-region MCMC

  #212 opened 2 years ago
  0

• Problem with mcstate chain parallelisation

  #211 opened 2 years ago
  7

• Speculative mcmc

  #207 opened 2 years ago
  0

• Fitting a model to multiple variant waves with cycling of strains

  #202 opened 3 years ago
  1

• update DESCRIPTION

  #200 opened 3 years ago
  0

• Replace progress with cli

  #199 opened 3 years ago
  0

• Can't run the particle_filter$run() function in the Examples

  #198 opened 3 years ago
  1

• More efficient multistage models

  #195 opened 3 years ago
  0

• faster vignettes

  #194 opened 3 years ago
  1

• test suite not robust to missing optional deps

  #193 opened 3 years ago
  3

• pmcmc's initial argument should have no default and move ahead of initial

  #190 opened 3 years ago
  0

• Add support for computing covariance matrices etc into the package

  #189 opened 3 years ago
  0

• rename pars_multi

  #187 opened 3 years ago
  0

• add initial_log_likelihood argument to particle filter

  #185 opened 3 years ago
  1

• Add example on fixing user() params to docs

  #184 opened 3 years ago
  0

• Confirm nested behaviour with staggered data

  #182 opened 3 years ago
  0

• Check that particle filter data is still valid after subsetting

  #180 opened 3 years ago
  0

• Add pmcmc_chains_combine that accepts path

  #179 opened 3 years ago
  1

• Support for using the compiled compare in more places

  #177 opened 3 years ago
  0

• Check that pmcmc initial parameters are in range

  #175 opened 3 years ago
  5

• Add set_rng_method to filter, use this from pmcmc

  #174 opened 3 years ago
  0

• particle_filter$state should get option to return single trajectory

  #173 opened 3 years ago
  0

• Particle filter caries index that has too much information

  #172 opened 3 years ago
  0

• Improvements to particle filter data (nested)

  #171 opened 3 years ago
  0

• Add min_log_likelihood support for deterministic and nested models

  #167 opened 3 years ago
  0

• Add min_log_likelihood support via compiled compare

  #166 opened 3 years ago
  0

• Reduce duplication between filter and nested filter

  #161 opened 3 years ago
  0

• Multistage filter

  #159 opened 3 years ago
  0

• Better distributed seeding

  #155 opened 3 years ago
  0

• restart is not supported by particle_deterministic

  #153 opened 3 years ago
  1

• Investigate coverage change

  #151 opened 3 years ago
  1

• consider using posterior for handling samples

  #146 opened 3 years ago
  0

• callr's i/o is a bottleneck

  #142 opened 3 years ago
  0

• deterministic version of filter

  #139 opened 3 years ago
  0

• Allow early termination of particle filter

  #138 opened 3 years ago
  0

• Allow gpu models to be used easily

  #135 opened 3 years ago
  0

• Harmonise sir example setup

  #134 opened 3 years ago
  0

• Make it easier to split chains over (say) nodes of the HPC

  #129 opened 3 years ago
  0

• Implement IF2 algorithm

  #123 opened 3 years ago
  0

• Epic: CUDA/GPU wishlist (inference methods)

  #122 opened 4 years ago
  0

• Run compiled version of particle filter if available

  #118 opened 4 years ago
  0

• Remove old control

  #114 opened 4 years ago
  0

• compute evidence in smc2

  #113 opened 4 years ago
  1

• interface to restart smc2

  #112 opened 4 years ago
  0