Pinned Repositories
convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
pheno-ranker
Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.
B2RI_Documentation
Documentation for the Beacon v2 Reference Implementation
ALiBERO
Software for performing Automatic Ligand-guided Backbone Ensemble Receptor Optimization with ICM
beacon-v2
Unified repository for the GA4GH Beacon v2 API standard
beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools) - Actively maintained by the original author
BioSuper
EGA_inferred_genome_ref
Script to infer the reference genome from a VCF
pheno-lens
Visualize and Perform Data Analytics on Phenotypic and Clinical Data Stored in GA4GH Standards and Beyond
pheno-search
Streamlined Searching in GA4GH-Standard Phenotypic and Clinical Data Repositories and Beyond
mrueda's Repositories
mrueda/ALiBERO
Software for performing Automatic Ligand-guided Backbone Ensemble Receptor Optimization with ICM
mrueda/beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools) - Actively maintained by the original author
mrueda/pheno-lens
Visualize and Perform Data Analytics on Phenotypic and Clinical Data Stored in GA4GH Standards and Beyond
mrueda/pheno-search
Streamlined Searching in GA4GH-Standard Phenotypic and Clinical Data Repositories and Beyond
mrueda/beacon-v2
Unified repository for the GA4GH Beacon v2 API standard
mrueda/BioSuper
mrueda/datamatrix2codes
Parser for strings obtained from Data Matrix 2D barcodes in medicine-boxes in Spain
mrueda/EGA_declared_genome_ref
Script to parse the declared genome (from XML) in EGA submissions
mrueda/EGA_inferred_genome_ref
Script to infer the reference genome from a VCF
mrueda/EGA_metadata
Script to parse EGA datasets' metadata
mrueda/Epitopes4Cancer
SRTI - Results in HTML from an immuno-oncology project developed in collaboration with Scripps scientists
mrueda/GPCRDock2010
mrueda/MRC
mrueda/pxf-validator
mrueda/RD-Connect_to_beaconv2
Scripts to convert RD-Connect data to Beacon v2
mrueda/ScrippsCall
SRTI framework to perform variant calling and prioritization of WES
mrueda/SG-Adviser-mtDNA
SRTI - web server to analyze mtDNA
mrueda/SimiCon
mrueda/SRTI-Variant-Browser
SRTI - web server to display genomic variations