ms609

Palaeontology & phylogenetics

Department of Earth Sciences, Durham UniversityDurham, UK

Pinned Repositories

citation-bot
Citation bot is a tool to expand and format references at Wikipedia. It retrieves citation data from a variety of sources including CrossRef (DOI), PMID, PMC and JSTOR, and returns a formatted citation. Report bugs at https://en.wikipedia.org/wiki/User_talk:Citation_bot
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Concentration
Strategies to improve concentration
1 2 00
inapplicable
Logically consistent handling of inapplicable data in parsimony analysis
Language:C2 4 110
Quartet
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
Language:C++9 3 305
Rogue
Identify rogue taxa in phylogenetic trees within R
Language:Bluespec2 3 140
Ternary
Create ternary plots in R
Language:R30 3 503
TreeDist
Calculate distances between phylogenetic trees in R
Language:R26 5 495
TreeSearch
R package for phylogenetic tree search under custom optimality criteria
Language:R5 5 834
TreeTools
Create, modify and analyse phylogenetic trees in R
Language:R15 3 517

ms609's Repositories

ms609/citation-bot
Citation bot is a tool to expand and format references at Wikipedia. It retrieves citation data from a variety of sources including CrossRef (DOI), PMID, PMC and JSTOR, and returns a formatted citation. Report bugs at https://en.wikipedia.org/wiki/User_talk:Citation_bot
Language:PHP49 13 26523
ms609/Ternary
Create ternary plots in R
Language:R30 3 503
ms609/TreeDist
Calculate distances between phylogenetic trees in R
Language:R26 5 495
ms609/TreeTools
Create, modify and analyse phylogenetic trees in R
Language:R15 3 517
ms609/Quartet
R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
Language:C++9 3 305
ms609/TreeSearch
R package for phylogenetic tree search under custom optimality criteria
Language:R5 5 834
ms609/Rogue
Identify rogue taxa in phylogenetic trees within R
Language:Bluespec2 3 140
ms609/actions
GitHub actions for the R language
2 0
ms609/ape
analysis of phylogenetics and evolution
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ms609/beast2
Bayesian Evolutionary Analysis by Sampling Trees
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ms609/BEASTmasteR
R code for writing Beast2 XML (especially morphology/tip-dating)
Language:R1 0
ms609/climenv
climenv: download, extract and visualise climatic and elevation data
Language:R
ms609/CongreveLamsdell2016
Data generated from Congreve and Lamsdell (2016). See readme below for documentation.
Language:R
ms609/distance
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ms609/doconv
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ms609/geodata
download geographic data
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ms609/matrixes
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ms609/MorphoBank
Process MorphoBank projects in R
Language:R3 0
ms609/ms609
Config files for my GitHub profile.
2 0
ms609/navigator
ms609/OReillyEtAl2016
Data generated from O'Reilly et al. (2016). See Readme below for documentation.
Language:Perl
ms609/packages
R packages
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ms609/pandocker
Docker image for pandoc with xelatex
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ms609/phylo-workflow-rotadiscus
Rotadiscus analysis
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ms609/PlotTools
Tools for plotting with base R
Language:R2 2
ms609/preferences
Preferences for software
2 0
ms609/RcppHungarian
Hungarian Algorithm for solving minimum bipartite matching problems
Language:C++1 0
ms609/RogueNaRok
A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index
Language:C1 0
ms609/styles
Official repository for Citation Style Language (CSL) citation styles.
Language:Ruby3 0
ms609/usage
Package download statistics
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