msberends

Medical epidemiologist/microbiologist at University Medical Center Groningen and head of @certe-medical-epidemiology

University Medical Center GroningenNorthern Netherlands

Pinned Repositories

a_new_instrument_for_microbial_epidemiology
This is my full PhD thesis in R Markdown (using the bookdown package), containing a PDF and EPUB file, and a website in the ‘docs’ folder with the integral content of the book. The shortened URL is git.io/PhDthesisAMR.
Language:CSS20
AMR
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
Language:R79 6 11412
AMR_data_analysis_with_R
Source code of the book: "Antimicrobial Resistance Data Analysis With R"
Language:TeX10
clean
Fast and Easy Data Cleaning (in R)
Language:R49 4 11
cleaner
Fast and Easy Data Cleaning (in R)
Language:R31 2 12
microorganisms
An R package containing data sets with up to date microbial taxonomy
Language:R20
nelson
R Package For Nelson's Quality Control Rules
Language:R1 0 00
radar
An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny
Language:R10
sf
Simple Features for R
Language:R10

msberends's Repositories

msberends/AMR
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
Language:R79 6 11412
msberends/clean
Fast and Easy Data Cleaning (in R)
Language:R49 4 11
msberends/cleaner
Fast and Easy Data Cleaning (in R)
Language:R31 2 12
msberends/a_new_instrument_for_microbial_epidemiology
This is my full PhD thesis in R Markdown (using the bookdown package), containing a PDF and EPUB file, and a website in the ‘docs’ folder with the integral content of the book. The shortened URL is git.io/PhDthesisAMR.
Language:CSS20
msberends/microorganisms
An R package containing data sets with up to date microbial taxonomy
Language:R20
msberends/AMR_data_analysis_with_R
Source code of the book: "Antimicrobial Resistance Data Analysis With R"
Language:TeX10
msberends/radar
An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny
Language:R10
msberends/sf
Simple Features for R
Language:R10
msberends/ahon
Language:R
msberends/auto-r-pkg-version
Language:R
msberends/bartlett_et_al_2022_human_pathogens
msberends/caret
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
Language:R0 0
msberends/certe-medical-epidemiology
Source universe for: certe-medical-epidemiology
msberends/eucic2023
Language:R2 0
msberends/gallery
Gallery of ggplot2 extensions
Language:SCSS
msberends/hashing
Simple Shiny app to encrypt data for safe, anonymised data transfer
Language:R
msberends/mariana
A thTheme and RStudio theme from Sublime Text 3
Language:R
msberends/Microsoft365R
R SDK for interacting with Microsoft 365 APIs
msberends/msberends.r-universe.dev
msberends/OpenCore-Legacy-Patcher
Experience macOS just like before
msberends/PhD_student_info
This is a simple repo with info for my (new) PhD students.
msberends/pillar
Format columns with colour
msberends/pkgdown
Generate static html documentation for an R package
msberends/poorman
A copy of dplyr verbs using only base R
Language:R0 0
msberends/r-for-teaching
Portable version of R and RStudio, with the AMR package and most tidyverse packages pre-installed
msberends/roxygen2
Generate R package documentation from inline R comments
msberends/scamR_prep
Gerrit, Johannes, Matthijs
Language:HTML3 0
msberends/scamRmatthijs
Language:R1 0
msberends/testrepo
msberends/tinytest
A lightweight, no-dependency, but full-featured package for unit testing in R