Pinned Repositories
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2017
coverage_analysis
dashboard
error_correction
flipabit
Thought experiment of what happens when a binary program is randomly edited
galaxy
Data intensive science for everyone.
genometools
Collection of smaller utilities and helper scripts
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore to a reference genome with a focus on reads that span structural variations
spacemonitor
HTML TreeMap of your current disk usage
wga-essentials
Docker image containing Whole Genome Assembly (WGA) essentials
mschatz's Repositories
mschatz/coverage_analysis
mschatz/genometools
Collection of smaller utilities and helper scripts
mschatz/wga-essentials
Docker image containing Whole Genome Assembly (WGA) essentials
mschatz/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2017
mschatz/galaxy
Data intensive science for everyone.
mschatz/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
mschatz/dashboard
mschatz/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore to a reference genome with a focus on reads that span structural variations
mschatz/10xReadsSimulator
10x Genomics Reads Simulator
mschatz/AnVIL
Interact with AnVIL and Leonardo projects
mschatz/anvil-portal
The front-facing AnVIL user portal
mschatz/bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
mschatz/CHM13
The complete sequence of a human genome
mschatz/contrail
Archive of contrail genome assembler
mschatz/datasharing
The Leek group guide to data sharing
mschatz/galaxy-hub
Galaxy Community Hub
mschatz/gxy.io
The gxy.io link shortening service
mschatz/learn-wdl
Educational materials for learning WDL
mschatz/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
mschatz/ModDotPlot
mschatz/nn-zero-to-hero
Neural Networks: Zero to Hero
mschatz/pan-sol-data
Genomic data resources from the pan-Solanum genomes project
mschatz/plotlydev
mschatz/primer-markdown
Stylesheets for rendering GitHub Flavored Markdown with Primer.
mschatz/pyencoded-tools
mschatz/sapling
SAPLING: Suffix Array Piecewise Linear INdex for Genomics
mschatz/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
mschatz/T2T_1kgp_recall
mschatz/vcf2diploid
personal genome constructor
mschatz/wort