mscook
DevOps Enablement @Xero. Previously: Eng Director @Mastercard, Team Lead @Ladbrokes, Solutions Consultant @itoc. Likes dev, ops, sec, ci, cd, clouds
@XeroBrisbane, Australia
Pinned Repositories
Banzai-MicrobialGenomics-Pipeline
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
BanzaiDB
BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.
GenomeBaser
Manage complete (bacterial genomes) from NCBI
image-compare
Compare multiple images reporting similarity
pyParaTools
pyParaTools - fitting paramagnetic observables to theoretical models
SeqFindR
A tool to easily create informative genomic feature plots
to-gff
Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)
mscook's Repositories
mscook/SeqFindR
A tool to easily create informative genomic feature plots
mscook/to-gff
Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)
mscook/Banzai-MicrobialGenomics-Pipeline
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
mscook/BanzaiDB
BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.
mscook/GenomeBaser
Manage complete (bacterial genomes) from NCBI
mscook/pyParaTools
pyParaTools - fitting paramagnetic observables to theoretical models
mscook/nesoni
High throughput sequencing analysis tools
mscook/VFDB
Virulence factors & Islands. ST131 99 paper. SeqFindR formatted.
mscook/2015-09-07-nanning
Nanning SWC 07 September 2015
mscook/Archiver
Archiving of NGS data
mscook/Banzai-controller
Client-side Banzai
mscook/beats4pi
Docker image to build elastic/beats v 7.0.0 for Raspberry Pi
mscook/CV
Curriculum Vitae of Mitchell Jon Stanton-Cook
mscook/data-fetcher
Get reads in SRA quickly!
mscook/deNumnut
Don't be a numnuts
mscook/DISCus
Invertible DNA switch frequency counter
mscook/dotfiles-1
.files, including ~/.osx — sensible hacker defaults for OS X
mscook/Home-Security-by-Pi
Description on how I configured the installation and Security of Raspberry Pi and how I keep it fit for use and purpose.
mscook/homebrew-BanzaiNGS
Brew recipes for Banzai Pipeline dependencies
mscook/homebrew-science
Scientific formulae for the Homebrew package manager
mscook/mscook
mscook/PDOIB
Working with Socrata + RethinkDB
mscook/pipelin.es
Pipelin.es is a NGS data analysis pipeline evaluation tool
mscook/RethinkDB-http-example
Play around with RethinkDB's External API access (.http())
mscook/SeqFindR-d3js
Interactive SeqFindR images for the web
mscook/seqhandler
mscook/uPEP
A tool to identify upstream ORFs that have the potential to encode bioactive peptides
mscook/uPEP-helpers
uPEP-helpers: a core fabfile for managing uPEP databases
mscook/uqbinfpy
UQ BIOL3014 (Advanced Bioinformatics) support code.
mscook/WSTSFU
Convert M$ Excel based NGS worksheets into a useful format (JSON)