mshadbolt
Bioinformatician, curator, wrangler, Project Manager
@CanDIG / University Health NetworkVancouver, Canada
Pinned Repositories
about-me
A website to describe my experience and skills
Ae_aegypti-toolset
Set of scripts to aide Aedes aegypti genomic analyses
anatomy-of-morbidity-project
The HackSeq18 Anatomy of Morbidity project space
beacon-v2
Unified repository for Beacon v2 Components - Under Construction
beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools)
biotool
Template bioinformatics script in various languages based on "Ten recommendations for creating usable bioinformatics command line software" by Torsten Seemann (http://www.gigasciencejournal.com/content/2/1/15)
CanDIGv2
The CanDIG v2 platform
candigv2-ingest
cell-ontology
An ontology of cell types
D3-visualising-data
Lesson plans for teaching the basics of HTML, CSS, SVG, JSON, and JS (primarily D3.js), in order to create browser-based data visualisations.
mshadbolt's Repositories
mshadbolt/anatomy-of-morbidity-project
The HackSeq18 Anatomy of Morbidity project space
mshadbolt/about-me
A website to describe my experience and skills
mshadbolt/Ae_aegypti-toolset
Set of scripts to aide Aedes aegypti genomic analyses
mshadbolt/beacon-v2
Unified repository for Beacon v2 Components - Under Construction
mshadbolt/beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools)
mshadbolt/biotool
Template bioinformatics script in various languages based on "Ten recommendations for creating usable bioinformatics command line software" by Torsten Seemann (http://www.gigasciencejournal.com/content/2/1/15)
mshadbolt/CanDIGv2
The CanDIG v2 platform
mshadbolt/candigv2-ingest
mshadbolt/cell-ontology
An ontology of cell types
mshadbolt/d3heatmap
mshadbolt/dbot-demo
🤖 Fork me to try out Dependabot
mshadbolt/dcp-cli
HCA Data Coordination Platform Command Line Interface
mshadbolt/DUO
Ontology for consent codes and data use requirements
mshadbolt/elixir-toolkit-theme
Flexible Jekyll theme using bootstrap 5 as CSS framework.
mshadbolt/elixir-toolkit-theme-example
Example of ELIXIR toolkit theme as a remote jekyll theme
mshadbolt/fega-mm
mshadbolt/gen3-helm
Helm charts for Gen3 Deployments
mshadbolt/human-omics-data-sharing-field-guide
Prototype for Human Genomics Data Sharing Field Guide Website
mshadbolt/isomiRs
analyze isomiRs from seqbuster tool
mshadbolt/katsu
Phenopackets/FHIR-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io
mshadbolt/latex-novice
Introductory LaTeX workshop for ResBaz/SWC.
mshadbolt/manhattanly
mshadbolt/mshadbolt.github.io
Build a Jekyll blog in minutes, without touching the command line.
mshadbolt/oneliners
Useful bash one-liners for bioinformatics.
mshadbolt/phenopacket-schema
Repository for the GA4GH phenopacket schema
mshadbolt/README-template.md
A README template for anyone to copy and use.
mshadbolt/sbeacon-exploration
Serverless Beacon v2 exploration for UMCCR use cases
mshadbolt/schema-template-generator
Interactive UI for generating metadata schema templates
mshadbolt/test-heroku
app to see how heroku app hosting might work
mshadbolt/who-am-i
All about me