msincan/ci4cc-informatics-resources

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

ci4cc-informatics-resources

This is a community-maintained list of resources that the CI4CC organization and larger cancer informatics have found useful or are developing. Contributions welcome...

Clinical Trials

Databases and APIs

• Access to Aggregate Content of ClinicalTrials.gov - Data from ClinicalTrials.gov parsed into an open PostgreSQL database. - [Database]
• ClinicalTrials.gov - ClinicalTrials.gov is a registry and results database of publicly and privately supported clinical studies of human participants conducted around the world. - [API,Database]
• CTRP Clinical Trials API - json-based API that includes CTRP-based clinical trials information, enriched with NCI thesaurus entries. - [API]
• EU Clinical Trials Register - The EU Clinical Trials Register contains information on interventional clinical trials on medicines conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004. - [Database, API]
• OpenTrials.net - Open database and API that is currently hosting data from ClinicalTrials.gov, WHO ITCRP, and the EU Clinical Trials Register. - [Database, API]
• WHO International Clinical Trials Registry Platform (ICTRP) - Search for clinical trials at the ICTRP. - [Database, API]

Policies and Standards

• WHO International Clinical Trials Registry Platform (ICTRP) Standards for Registries - Document describing the WHO ITCRP standards recommendations - [Policy, Standards]

Cancer Registries

Databases and APIs

• SEER - The Surveillance, Epidemiology, and End Results (SEER) Program of the National Cancer Institute provides information on cancer statistics in an effort to reduce the cancer burden among the U.S. population. - [Database, API]

Data Engineering and Analytics

Natural Language Processing

• Apache cTAKES - Apache cTAKES™ is a natural language processing system for extraction of information from electronic medical record clinical free-text. - [OSS]

Analytics

Image Analysis

Data Platforms

Genomics

Clinical

Data Sharing and Open Data Efforts

• NIH Common Data Element (CDE) Resource Portal - National Library of Medicine, National Institutes of Health, Common Data Element (CDE) Resource Portal

Genomics

• List of open cancer variant databases - A community-maintained list of cancer variant databases, including some with evidence-based intervention data.