Comparison with non-TCGA/TARGET/GTEX samples
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BunnyBoss commented
Comparison with non-TCGA/TARGET/GTEX samples
BunnyBoss commented
Hello,
I would like to use GTEX expression data as reference to extract the deferentially expressed genes from the clinical tumor samples (NOT from TCGA/TARGET).
Since I cannot directly compare them, should I use the same pipeline to process my samples fastq files and compare the final output with GTEX samples ?
Please let me know your valuable suggestions.