fraction_loh from copy-number-scores.R and frac_loh from check-fit.R not the same
YingYa opened this issue · 0 comments
YingYa commented
The fraction_loh from copy-number-scores.R is wrong, while the rac_loh from check-fit.R is correct.
The line 92 of copy-number-scores.R should be changed:
"loh = as.numeric(sum(length[lcn == 0]))“ change to "loh = as.numeric(sum(length[lcn == 0], na.rm = TRUE))"