msmbuilder/msmexplorer

Issues

• type object 'Dataset' has no attribute 'unify_chunks'

  #127 opened a year ago by hf1s
  2

• seaborn.apionly is deprecated

  #104 opened 7 years ago by cxhernandez
  2

• ImportError: cannot import name '_scipy_univariate_kde' from 'seaborn.distributions'

  #125 opened 3 years ago by MCVifpen
  1

• Installation of msmexplorer

  #126 opened 3 years ago by TianmingQu
  0

• pip install error: No module named 'basesetup'

  #118 opened 7 years ago by cxhernandez
  1

• Plotting transition pathway using MSM and projected on tICs

  #124 opened 6 years ago by sbhakat
  0

• No module named 'corner'

  #123 opened 6 years ago by nnj1
  1

• What are the numbers plotted on the axis of the histogram plot

  #122 opened 7 years ago by orthonalmatrix
  1

• Port some of the schrodinger's plots

  #98 opened 7 years ago by msultan
  7

• Add free energy plots using GMM models

  #121 opened 7 years ago by jeiros
  0

• MSMExplorer Installation: conflict error 'numba'

  #117 opened 7 years ago by AlirezaTafazzol
  1

• plot_free_energy woes with ergodic trimming

  #82 opened 8 years ago by cxhernandez
  0

• add t-SNE plot

  #86 opened 8 years ago by cxhernandez
  0

• plot_free_energy_2d.py fails with "ValueError: a and p must have same size"

  #114 opened 7 years ago by mabianchet
  8

• Fix coveralls

  #113 opened 7 years ago by cxhernandez
  0

• AttributeError: module 'msmexplorer' has no attribute 'plot_implied_timescales'

  #111 opened 7 years ago by mkhoshle
  3

• Use of undirected graph in plot_msm_network

  #110 opened 7 years ago by jeiros
  4

• Argument for time units in visualizations

  #106 opened 7 years ago by cing
  4

• Add implied timescales plot to notebook

  #96 opened 7 years ago by cxhernandez
  4

• plot_msm_network and plot_tpaths problems when msm is not 100% ergodic

  #109 opened 7 years ago by jeiros
  2

• Adding 2D tIC trajectory visualization

  #105 opened 7 years ago by cing
  3

• Papers that Use/Cite MSMExplorer

  #59 opened 8 years ago by cxhernandez
  4

• add plot_pipeline

  #88 opened 8 years ago by cxhernandez
  0

• Implement Joy Plots

  #101 opened 7 years ago by cxhernandez
  9

• Interpretation of plot_pop_resids

  #94 opened 8 years ago by jeiros
  5

• add implied timescales plot vs lag time

  #89 opened 8 years ago by jeiros
  3

• Wrong color in most dense region of free energy plot

  #91 opened 8 years ago by jeiros
  2

• [JOSS REVIEW]

  #77 opened 8 years ago by anotherjoshsmith
  8

• integrate ipymol

  #36 opened 8 years ago by cxhernandez
  1

• Rendering NGLView trajectories as images or movies

  #51 opened 8 years ago by cxhernandez
  3

• Submit to JOSS

  #64 opened 8 years ago by cxhernandez
  1

• Add contribution section

  #50 opened 8 years ago by cxhernandez
  1

• Figure out how to incorporate helper functions

  #28 opened 8 years ago by cxhernandez
  0

• convenience function to save fig for publication

  #21 opened 8 years ago by cxhernandez
  1

• handle args more gracefully in `msme_colors`

  #48 opened 8 years ago by cxhernandez
  0

• Support Pipeline/dataset objects

  #60 opened 8 years ago by cxhernandez
  0

• option to add a colorbar to `plot_free_energy`

  #72 opened 8 years ago by cxhernandez
  1

• Conda build issues

  #68 opened 8 years ago by jchodera
  6

• `node_size` should be from `msms.populations_` as default

  #49 opened 8 years ago by cxhernandez
  1

• `plot_trace` gets mad if only `ax` is provided

  #52 opened 8 years ago by mpharrigan
  5

• Do we really want seaborn.apionly?

  #53 opened 8 years ago by mpharrigan
  5

• fix my name or utf-8

  #65 opened 8 years ago by cxhernandez
  1

• use graph-tool

  #46 opened 8 years ago by cxhernandez
  1

• Add tests for utilities

  #42 opened 8 years ago by cxhernandez
  1

• Path vertices problem in Chord Diagram

  #37 opened 8 years ago by cing
  3

• Release v0.1

  #26 opened 8 years ago by cxhernandez
  0

• add more options to plot_voronoi

  #10 opened 8 years ago by cxhernandez
  1

• Improve docs

  #27 opened 8 years ago by cxhernandez
  1

• Add example notebook

  #29 opened 8 years ago by cxhernandez
  1

• Add gallery page

  #12 opened 8 years ago by cxhernandez
  1