/fba_tools

A suite of metabolic modeling tools created using the KBase SDK

Primary LanguagePerlMIT LicenseMIT

Build Status

fba_tools

OVERVIEW


This SDK Module contains methods relating to the reconstruction and analysis of metabolic models in KBase.

Release notes


VERSION: 1.0.0 (Released 4/21/2016)


NEW FEATURES:

-Ability to gapfill a model on all phenotype conditions either cumulatively or iteratively

UPDATED FEATURES / MAJOR BUG FIXES:

-Fixed a bug in the numbering of gapfill solution objects when a model is consecutively gapfilled multiple times

ANTICIPATED FUTURE DEVELOPMENTS:

-Integration of probabilistic gapfilling -Improved multiple-model comparison -Improved model and media editors -Improved error handling in methods -Support for large-scale analysis of many models, media, or genomes at once

VERSION: 0.0.2 (Released 3/4/2016)


This was the initial public release of the modeling tools as an SDK module. For release notes before this time, see https://github.com/kbase/KBaseFBAModeling.