/snakemake-condor-profile

Snakemake cluster profile for HTCondor

Primary LanguagePythonMIT LicenseMIT

HTCondor

This profile configures Snakemake to run on clusters utilizing the HTCondor scheduler.

Setup

Deploy profile

To deploy this profile, run

mkdir -p ~/.config/snakemake
cd ~/.config/snakemake
cookiecutter https://github.com/msto/snakemake-condor-profile.git

Then, you can run Snakemake with

snakemake --profile HTCondor ...

Version support

Tested on HTCondor 8.4.11 and Snakemake 5.4.2