mstudiva
Associate Scientist at the University of Miami's Cooperative Institute for Marine and Atmospheric Studies (CIMAS) and NOAA-AOML
University of MiamiMiami, Florida
Pinned Repositories
2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
Acropora-cervicornis-annotated-transcriptome
Transcriptome annotation for Acropora cervicornis
mstudiva
Papers and such
PortMiami-urban-coral-resilience
Rhino-Python-3D-Coral-Reefs
SCTLD-ballast-transmission
SCTLD-intervention-transcriptomics
SCTLD-resistance-genomics
Data and scripts associated with genetic analysis of Orbicella faveolata genotypes exposed to stony coral tissue loss disease (SCTLD)
SCTLD-sediment-transmission
tag-based_RNAseq
Cost-efficient genome-wide gene expression profiling
mstudiva's Repositories
mstudiva/Rhino-Python-3D-Coral-Reefs
mstudiva/tag-based_RNAseq
Cost-efficient genome-wide gene expression profiling
mstudiva/2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
mstudiva/Acropora-cervicornis-annotated-transcriptome
Transcriptome annotation for Acropora cervicornis
mstudiva/annotatingTranscriptomes
Assembly and annotation of transcriptomes de novo
mstudiva/Breviolum-annotated-transcriptome
Transcriptome annotation for Breviolum
mstudiva/mstudiva
Papers and such
mstudiva/PortMiami-urban-coral-resilience
mstudiva/SCTLD-ballast-transmission
mstudiva/SCTLD-intervention-transcriptomics
mstudiva/SCTLD-resistance-genomics
Data and scripts associated with genetic analysis of Orbicella faveolata genotypes exposed to stony coral tissue loss disease (SCTLD)
mstudiva/SCTLD-sediment-transmission
mstudiva/Mcav-Cladocopium-Annotated-Transcriptome
Includes the transcriptome annotation files needed for RNA-Seq analysis of the coral Montastraea cavernosa and algal symbionts of the genus Cladocopium spp. Transcriptomes generated by Misha Matz (https://www.dropbox.com/s/0inwmljv6ti643o/Mcavernosa_genome.tgz) and Sarah Davies (http://sites.bu.edu/davieslab/files/2017/11/CladeC_Symbiodinium_transcriptome.zip)
mstudiva/Mcav-microsats
analysis pipeline and template files for microsatellite analysis with M. cavernosa
mstudiva/Mcav-morphometrics
Protocols and data templates used for morphological analyses
mstudiva/NWGOM_ROV_2010_2015
Data and code associated with NWGOM ROV community analyses
mstudiva/Ofav-Durusdinium-Annotated-Transcriptome
Transcriptome annotation for Orbicella faveolata and Durusdinium
mstudiva/Plampa-denovo-transcriptome
mstudiva/Pseudodiploria-clivosa-annotated-transcriptome
Transcriptome annotation for Pseudodiploria clivosa
mstudiva/Siderastrea-siderea-annotated-transcriptome
Transcriptome annotation for Siderastrea siderea
mstudiva/Symbiodinium-annotated-transcriptome
Transcriptome annotation for Symbiodinium
mstudiva/Thermal-stress-estuarine-discharge-Mcav
Scripts associated with the analysis of whole-transcriptome gene expression profiles for Montastraea cavernosa corals and algal symbionts Cladocopium spp. from southeast Florida exposed to thermal stress and estuarine discharge using in situ and ex situ experiments
mstudiva/Transcriptional-plasticity-mesophotic-Mcav
Bioinformatics pipelines and scripts for the manuscript by Studivan and Voss "Transcriptional plasticity of mesophotic corals among natural populations and transplants of Montastraea cavernosa in the Gulf of Mexico and Belize"
mstudiva/Urban-coral-population-genetics
2bRAD population genetics and algal symbiont qPCR of corals from reefs vs urban habitats in southeast Florida