/old-phylesystem

The Open Tree Of Life NexSON Datastore

Primary LanguagePythonBSD 2-Clause "Simplified" LicenseBSD-2-Clause

old-phylesystem or "the repo formerly known as phylesystem"

Before we started tracking changes permanently in the new curation tool for the Open Tree of Life project, this was the phylesystem repo.

Fetching changes from phylografter.

As a temporary, stopgap measure we can run bin/refresh_nexsons_from_phylografter.py to fetch new versions of the files from phylografter. This will overwrite files in the repo without any sophisticated merging. So this is intended to be used only before we start using this repo as a data store for study curation.

The bin/refresh_nexsons_from_phylografter.py script requires that the python requests package be installed. You can do this with:

$ pip install requests

License

The code in this repository is released under the 2-clause BSD license. See the LICENSE file for more details.

The data in this repository is released under the Create Commons Zero 1.0 Universal license.