/gc-rich

Primary LanguageScalaApache License 2.0Apache-2.0

gc-rich

Calculates GC-richness for all the reads in a FASTQ file. Intended as a playground for optimizing use of fs2 with FASTQ data.

Usage

Usage: gc-rich --fastq <path>

Calculates GC-richness for a FASTQ file

Options and flags:
    --help
        Display this help text.
    --version, -v
        Print the version number and exit.
    --fastq <path>, -f <path>
        The FASTQ file